Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02027 ATGACACCTCTCTCAAAGCTCTTCCACAAGCTTTGTTCCAAAATGATAATCCTGTTAGCGTCCCTGCTAATAGAACTTATCATTCTCATTCACAAACTAAAATCATCGTCACGTTCAATCAGCACCCACCAGTACCTCAAATTCATCGAGAAGACGAACCCCACGATTTGCTACACCAAAAGATTGTCGAAGGCAGAACAGGGTGGTGCTGCAGAGTGTAGGGTATGCTTGTGCGAATTGGAGGAAGGGGAGAAGGTGAGGAAGTTGCAATGCCATCACATGTTTCATAGGGATTGTTTGGACAAGTGGTTGCAGCAATATTGGGCTACGTGCCCTCTCTGTAGGAAACAAGTGGTGCCGAATGATGTCGTGTTCAAGCACCGTCAGCACCAGAATCAAGCTGCGGAAGGTTTTGATGGAAATAATGATGACCACCTTCCCTATTTTTTATCAGCATTTCGTCGTGGCAACACTTTGCACAGATATTTCTGA 492 0.4512 MTPLSKLFHKLCSKMIILLASLLIELIILIHKLKSSSRSISTHQYLKFIEKTNPTICYTKRLSKAEQGGAAECRVCLCELEEGEKVRKLQCHHMFHRDCLDKWLQQYWATCPLCRKQVVPNDVVFKHRQHQNQAAEGFDGNNDDHLPYFLSAFRRGNTLHRYF 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02027 163 SMART ring_2 73 114 IPR001841 -
Spst1g02027 163 ProSiteProfiles Zinc finger RING-type profile. 73 115 IPR001841 -
Spst1g02027 163 PANTHER - 1 158 - -
Spst1g02027 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 121 IPR013083 -
Spst1g02027 163 SUPERFAMILY RING/U-box 58 121 - -
Spst1g02027 163 Pfam Ring finger domain 72 115 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02027 Spst-Chr1 28527910 28528401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02027 71 129 C3H Transcription Factor Family AT1G15100 52.542 5.33e-18 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02027 K16282 - gmx:102661897 207.608
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01409 3 17573921 17574412 Spst1g02027 1 28527910 28528401 PCT