Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02019 ATGAGGTGCTACGAAAGAAAACAACGAATGCGGTATGTGACGAAAAGAAACTATAAAGGGGAGACAATGTCAACTATGCGAATGCAAGACAAGGGGGAGAACACCCAACAACGACGCCCATTTAAAACCCAACAACACACATTCCGCACTGGTTTCCTAACGAAGTTCCTCACTGCTATTCAAATCAAATCTATCTCGCACCACAGCCAAGCGAAGCAAACCAATCGATGCGTCGCCGTCACACTCAAACGCCTGCTTCGCATCTCACTCTCTGAAGCGAAGCTGGCGACCACACTGACTTGGAGGTTTGCTGCCCACAGTGGCAGCACACTTGCTGCTAATGATATGGAAAGAAATGGTGATGGGAAGGCTCAAGATTCAGAGACTCTACCTCCCCATTCTGTATTGAAGATGGGATTGAGAGAACGTAGCAACAGCAGCAGCATGGAGGATCCAGATGGGACATTAGCGAGTGTTGCCCAATGCATTGAACAGCTGCGTCAGAGCTCATCTCCTGTGCAGGAGAAAGAGTATTCTTTGAAACAGTTATTGGAGCTTATTGATATGCGAGAAAATGCTTTCAGTGCTGTTGGATCTCATTCTCAGGCAGTTCCAGTACTTGTTTCCCTTCTCCGGTCTGGGTCTTTGAATGTGAAGATTCAGGCAGCAACTGTCTTGGGTACACTTTGTAAAGAAAATGAGCTTAGGGTGAAAGTCTTACTCGGAGGATGCATTCCTCCTTTGCTTGGTCTACTCAAGTCCAGTTCTGCTGAAGGTCAAGTAGCTGCTGCAAAGACAATTTTTGCTGTTTCTCAAGGTGGTGCCAAAGATCACATCGGATCAAAAATTTTTTCAACTGAAGGAGTTGTTCCTGTGCTATGGGAGCAGTTGCAAAAGGGCCTGAAGACAAATGTAGTTGATAATTTATTGACTGGGGCATTGAAAAATCTCTCCAGCAGCACTGATAGATTCTGGAATGCCACAATACAAGCTGGAGGAGTAGACATATTGATTAAGTTACTGACAACAGGACAGTCTAACACTTTAGCAAATGTGTGCTTTTTACTTGCCTGTGTGATGATGGAGGATGCATCTGTTTGTTCAAAATTGTTGACAGCAGAGGAAACTAAACAACTCATCAAACTTTTAAGCCCTGGTAATGATGCCTCTGTCAGGGCTGAAGCAGCAGGTGCTCTTAAATCTCTATCTTCCCAGTGCAAAGAGGCACGGAAAGAGATAGCCAATTCCAATGGTATTCCTGCTTTGATTAATGCTACCATAGCTCCTTCCAAAGAGTTCATGCAGGGTGAGTATGCTCAAGCCTTACAGGAGAATGCAATGTGTGCTTTAGCAAACATCTCTGGTGGTTTGTCATATGTCATCTCCAGTCTTGGTCAAAGCCTTGAATCATGCTCCTCACCTGCCCAAGCTGCTGACACGTTGGGGGCTTTAGCTTCAGCTCTTATGATATATGATGACAATGCAGAGTCTACTAGGGCCACGGATCCTTTGGCAGTTGAGCAGACATTGCTTGAACAATTTAAACCTCGCTTGCCATTCCTTGTGCAGGAACGGACCATTGAAGCCCTAGCTAGTTTGTATAGCAATCCTATACTGTCAATTAAGCTTGCAAATTCTGATGCAAAGCGATTGCTTGTTGGTTTAATAACAATGTCTGCCAATGAAGTGCAAGATGAACTTCTAAAATCTCTCTTGACATTGTGCAATACTGAATGCAGTCTGTGGCGTGCACTTCAGGGCCGGGAAGGAGTTCAGCTGTTGATATCTCTTCTGGGGCTCTCATCGGAACAGCAGCAAGAATGTGCTGTTGCCCTCCTTTGCCTTTTATCTAACGAAAATGATGAAAGTAAATGGGCCATTACTGCTGCTGGTGGTATACCTCCTCTTGTTCAAATTTTGGAGTCAGGATCTGCAAAAGCAAAGGAAGACTCAGCATCAATCCTTAGGAACCTATGTGATCACAGTGAGGATATACGTGCTTGTGTGGAAAGTGCTGATGCTGTTCCTGCATTGCTTTGGCTTTTGAAGAATGGAAGCCCAAATGGGAAGGAGATTGCGGCAAAGACTTTGAATCACTTAATTCATAAGTCTGATACAGCAACTATCAGTCAGCTTACAGCATTATTGACCAGTGATTTACCTGAATCTAAGGCTTATGTGTTAGATGCTTTGAGAAGTATGCTTTCTGTTGTTGCTCTTACCGATCTTCTACGTGAAGGCAGTGCTGCCAGTGATGCAATTGATACAATGATAAAATTATTGAGCTCAACCAAGCAAGAAACTCAGGCAAAGTCTATGTCTGCTCTGGCGGGAATTTTTGAAACGAGGAAAGATGTGCGAGAAAGCAGCATTGCTGTTAAAACTCTTTGGTCAGCATTGAAGCTGCTTAATGTTGAATCAGAAAGTATCTTAATGGAGTCCTGCCGCTGCTTGGCTGCAATATTTCTTTCCATCAAAGAGAACAGGGATGTGGTTGCAATTGCTAGAGATGCATTACCCTCCCTAGTTGCCCTAGCTAACTCTTCGGTTTTGGAAGTGGCGGAGCTGGCAACATGTGCTGTGGCTAACCTTATTCTGGATAGTGAAATTGCTGAGAAAGCTGATGCTGAAGAAGTCTTATTGGCTGCTACCAGAGTATTACGTGAAGGGACAATTTATGGAAAAATACATTCTGCTGCAGCAATTGCTCGCCTCTTGTATTCTAAGAGGCAATTTGATTATGCTGTAACTGATTGTGTGAATCGAGCTGGCACTGTTCTTGCATTAGTTTCTTTCTTGGAATTTGCTATCAATGGACTTAGTTCCACATCAGAAGCTCTAGAAGCACTTGCCATGCTGTCCAGGTCAGAAGTGAATGGTGAACACAGTAAGCCTGCTTGGGCAGTTTTGGCTGAATTTCCTAAAAGCATCCGCCCAATAGTTCTGTCGATTGCTGATTCAACGCCAGTCTTGCAGGATAAATCTATTGAAATATTATCACGATTATGTAAGGATCAACCTTTTGTTCTGGGAGACACTGTTGCTACTGCCTCTGGATGTATATCTTCTATAGCTAAGAGGATAATCTATTCTAATTCTAAAAATATAAAGATCAAAATTGGAGGAGCTGCTCTTCTTATTTGTGCAGCTACTGTAAATCATGAGAGGCTGCTCGAGGATCTCAATTTATCAAACTTGTGTACTAACCTTGTTCAGTCTCTTGTCGATATACTTATTTCTTCACAGGCTGCTTTGGATTATCAGCGTGATGAGAGCAGGGAGGTTATCAGCATTTGCAGGCATACAAAAGAAGCCAATGATGGTAAATCAAGCACTGGCACCGCAATTATTTCTGGTACCAACTTAGCTATATGGCTACTGACTGTTCTTGCTTGCCATGATGAAAAATGTAAAATTGCAATAATGGAGGCTGGTGCAGTTGAGTTTCTGAGTGACAGGATTGAAAATTGTTTCTCACTGTATAGTCAGATTGACTATAACGAAGATAGCAGCATGTGGATTTGTGCTTTGTTGTTGGCAATATTATTTCAAGATAGGGATATTATACGAGCACATGCAACCATGAAATCTATACCAGCACTTGCCAATTTATTGAAGTCAGAGGAATCAGCTAACAGATATTTTGCTGCACAATCAATAGCTAGCCTAGTCTGTAATGGTAGCAGGGGAACACTTCTTTCCGTGGCAAATTCTGGAGCAGCAGGGGGACTTATCTCCTTGCTTGGCTGTGCTGATACTGATATACAGGATCTTCTGGAATTGTCAGAAGAATTTTCTTTGGTGCGTTATCCTGATCAAGTTTCTCTTGAGAGATTGTTTAGAGTTGATGACATAAGAGTTGGTGCCACTTCTCGAAAGGCAATACCTGCTCTAGTTGATCTGCTCAAACCAATTCCAGAACGCCCAGGTGCACCATTTTTAGCACTTGGGCTTTTGACTCAGCTTGCTATAGATTGTCCATCAAATAAGATTGTAATGGTCGAGGCAGGGGCCCTAGAGGCACTTTCTAAGTATCTTTCACTAGGTCCACAAGATGCAACAGAAGAAGCTGCTACAGATCTGTTAGGGATTCTGTTTAGCAGTGCAGAAATACGAAGACATGAGTCAGCATTTGGAGCTGTTACTCAACTTGTAGCTGTCCTTCGTTTAGGAGGAAGGGCTGCAAGGTATAGGGCTGCAAAAGCTTTGGAAAGTTTATTCTCTGCTGACCATATTAGAAATGCAGATAGTGCTCGACAAGCTGTTCAACCCCTTGTGGAGATTCTTAATACTGGTTTAGAGAGAGAACAGCATGCTGCAATTGCTGCATTAGTTAGGTTACTGAGTGAAAACCCTTCGAAAGCACTCGCTGTTGCAGACGTTGAGATGAATGCAGTGGATGTTCTTTGTAGGATTCTTTCATCAGATTGTTCCATGGACCTCAAAGGGGATGCTGCAGAATTATGTTCTGTACTTTTTGGAAATACAAGGATTCGGTCCACAATGGCTGCTGCATGTTGTGTTGAACCTCTGGTGTCTCTCCTTGTAAGTGAGTTTAGTCCTGCTCACCATTCAGTTGTACGGGCATTGGATAGGCTTGTTGATGATGAGCAACTAGCTGAATTAGTTGCTGCACATGGTGCAGTTATTCCTCTTGTTGGACTACTTTATGGTAGGAATTATGTACTTAATGAGGCCATTTCCAGAGCACTGGTCAAGTTGGGAAAAGACAGGCCAGCTTGCAAAATGGAAATGGTGAAAGCTGGAGTTATTGAAAGCATACTTGACATCCTTCATGAAGCACCTGATTATCTATGTGCAGCTTTTGCCGAATTGTTGCGTATATTGACCAATAATGCTAGTATAGCTAAAGGACCATCGGCTGCTAAAGTAGTTGAACCCCTGTTTATGTTGCTAACAAGACAAGACTTTGGGCCAGATGGACAACATAGTGCATTGCAGGTTTTGGTTAATATCTTAGAACATCCACAGTGTCGTGCTGATTACACATTGACTTCTCACCAAGCTATTGAACCTCTTATCCCTTTGCTTGATTCTCCAATATCAGCAGTGCAACAGTTGGCTTCTGAGCTTCTATCACATCTTCTTTTAGAAGAACACCTTCAGAAAGATCTGGTGACACAGCTGGTTATTGGCCCTCTTATACGAGTTCTTGGTTCTGGTATACATATATTGCAGCAGAGAGCGGTCAAGGCCCTGGTAAGTATTGCACTGATATGGCCAAATGAAATTGCAAAAGAGGGTGGTGTTATTGAAATTTCAAAAGTTATATTGCAAGCTGATCCTTCCATTCCTCATGCTTTATGGGAGTCTGCTGCCTCTGTTTTGGCTAGTATTCTGCAATTTAGTTCTGAATACTACTTGGAAGTTCCAGTTGCTGTTTTGGTTAGGCTGCTTCGATCTGGCTTAGAAAGCACAGTTGTTGGTGCATTGAATGCTCTTCTTGTTTTGGAAAGTGACGATGGAACTAGTGCCGAAGCAATGGCTGAAAGTGGTGCTATAGAGGCTCTCTTGGAACTCTTACGATCTCATCAGTGCGAGGAAACTGCTGCAAGACTCTTAGAAGTGTTGCTGAACAATGTAAAGATAAGAGAAACAAAAGTTACTAAATCAGCCATCTTACCATTATCCCATTATCTCTTGGACCCACAAACCCAAGCACAACAAGCAAGGCTATTAGCAACATTGGCTCTTGGTGATCTATTTCAGAATGAGGGTCTTGCTCGGACAAGTGATGCAGTTTCAGCTTGTCGTGCTTTAGTGAATGTGCTTGAAGACCAACCAACTGAAGAAATGAAAGTGGTAGCCATATGTGCTCTGCAAAACCTTGTGACGTACAGTCGATCAAATAGAAGAGCAGTTGCAGAGGCTGGTGGGGTTCAGGTTATACTGGATCTGATAGGTTCAAGTGATCCTGAAACATCTGTTCAGGCTGCAATGTTTATTAAACTTCTATTTTTAAATCATACTATTCAAGAGTATGCTTCTAGTGAAACAGTTAGAGCAATAACTGCTGCTATTGAGAAGGACTTATGGGCTACTGGAACTGTGAACGAAGAGTATCTTAAAGCCTTAAATTCTCTTTTTAGTAACTTCCCAAGATTGCGAGCAACTGAGCCAGCAACGCTTAGCATTCCCCATCTGGTTACATCCTTAAAGACAGGCTCTGAGGCTACTCAGGAAGCTGCCTTAGATGCACTTTTCCTGCTTAGACAAGCTTGGTCAGCATGTCCGGCAGAAGTTTCAAGAGCTCAATCAATAGCGGCTGCAGATGCTATTCCTTTGCTGCAGTACTTGATCCAGTCTGCTCCCCCTCGCTTTCAGGAGAAGGCAGAGTTTTTATTGCAGTGTTTGCCAGGAACGTTGGTGGTGATTATCAAGCGTGGTAACAATATGAAGCAATCTGTTGGAAACCCAAGTGTTTTTTGCAAGCTTACACTTGGAAATACACCTCCAAGGCAAACCAAGGTGGTCTCAACTGGTCCTAATCCGGAGTGGGAAGAGAGCTTTTCATGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTCACATTTCTTGCAAAAACAAGAGCAAAATGGGAAAGAGTTCATTTGGGAAAGTGACAATCCAGATTGATCGGGTCGTAATGTTAGGAGCTGTATCTGGAGAGTACACTCTGTTGCCAGAAAGTAAAAGTGGTCCCTCGAGGAATTTAGAAATAGAATTCCAGTGGTCTAACAAGTGA 6747 0.4301 MRCYERKQRMRYVTKRNYKGETMSTMRMQDKGENTQQRRPFKTQQHTFRTGFLTKFLTAIQIKSISHHSQAKQTNRCVAVTLKRLLRISLSEAKLATTLTWRFAAHSGSTLAANDMERNGDGKAQDSETLPPHSVLKMGLRERSNSSSMEDPDGTLASVAQCIEQLRQSSSPVQEKEYSLKQLLELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGTLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQVAAAKTIFAVSQGGAKDHIGSKIFSTEGVVPVLWEQLQKGLKTNVVDNLLTGALKNLSSSTDRFWNATIQAGGVDILIKLLTTGQSNTLANVCFLLACVMMEDASVCSKLLTAEETKQLIKLLSPGNDASVRAEAAGALKSLSSQCKEARKEIANSNGIPALINATIAPSKEFMQGEYAQALQENAMCALANISGGLSYVISSLGQSLESCSSPAQAADTLGALASALMIYDDNAESTRATDPLAVEQTLLEQFKPRLPFLVQERTIEALASLYSNPILSIKLANSDAKRLLVGLITMSANEVQDELLKSLLTLCNTECSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKAYVLDALRSMLSVVALTDLLREGSAASDAIDTMIKLLSSTKQETQAKSMSALAGIFETRKDVRESSIAVKTLWSALKLLNVESESILMESCRCLAAIFLSIKENRDVVAIARDALPSLVALANSSVLEVAELATCAVANLILDSEIAEKADAEEVLLAATRVLREGTIYGKIHSAAAIARLLYSKRQFDYAVTDCVNRAGTVLALVSFLEFAINGLSSTSEALEALAMLSRSEVNGEHSKPAWAVLAEFPKSIRPIVLSIADSTPVLQDKSIEILSRLCKDQPFVLGDTVATASGCISSIAKRIIYSNSKNIKIKIGGAALLICAATVNHERLLEDLNLSNLCTNLVQSLVDILISSQAALDYQRDESREVISICRHTKEANDGKSSTGTAIISGTNLAIWLLTVLACHDEKCKIAIMEAGAVEFLSDRIENCFSLYSQIDYNEDSSMWICALLLAILFQDRDIIRAHATMKSIPALANLLKSEESANRYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLELSEEFSLVRYPDQVSLERLFRVDDIRVGATSRKAIPALVDLLKPIPERPGAPFLALGLLTQLAIDCPSNKIVMVEAGALEALSKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFGAVTQLVAVLRLGGRAARYRAAKALESLFSADHIRNADSARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSKALAVADVEMNAVDVLCRILSSDCSMDLKGDAAELCSVLFGNTRIRSTMAAACCVEPLVSLLVSEFSPAHHSVVRALDRLVDDEQLAELVAAHGAVIPLVGLLYGRNYVLNEAISRALVKLGKDRPACKMEMVKAGVIESILDILHEAPDYLCAAFAELLRILTNNASIAKGPSAAKVVEPLFMLLTRQDFGPDGQHSALQVLVNILEHPQCRADYTLTSHQAIEPLIPLLDSPISAVQQLASELLSHLLLEEHLQKDLVTQLVIGPLIRVLGSGIHILQQRAVKALVSIALIWPNEIAKEGGVIEISKVILQADPSIPHALWESAASVLASILQFSSEYYLEVPVAVLVRLLRSGLESTVVGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAILPLSHYLLDPQTQAQQARLLATLALGDLFQNEGLARTSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVTYSRSNRRAVAEAGGVQVILDLIGSSDPETSVQAAMFIKLLFLNHTIQEYASSETVRAITAAIEKDLWATGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSAPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVFCKLTLGNTPPRQTKVVSTGPNPEWEESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKSGPSRNLEIEFQWSNK 2248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02019 2248 Gene3D C2 domain 2125 2248 IPR035892 -
Spst1g02019 2248 Gene3D - 1461 1622 IPR011989 -
Spst1g02019 2248 Gene3D - 1623 1797 IPR011989 -
Spst1g02019 2248 MobiDBLite consensus disorder prediction 114 134 - -
Spst1g02019 2248 Pfam C2 domain 2127 2223 IPR000008 -
Spst1g02019 2248 ProSiteProfiles C2 domain profile. 2110 2225 IPR000008 -
Spst1g02019 2248 SMART arm_5 1495 1535 IPR000225 GO:0005515
Spst1g02019 2248 SMART arm_5 1954 1994 IPR000225 GO:0005515
Spst1g02019 2248 SMART arm_5 1911 1952 IPR000225 GO:0005515
Spst1g02019 2248 SMART arm_5 1326 1367 IPR000225 GO:0005515
Spst1g02019 2248 SMART arm_5 363 404 IPR000225 GO:0005515
Spst1g02019 2248 SMART arm_5 232 272 IPR000225 GO:0005515
Spst1g02019 2248 SMART arm_5 620 660 IPR000225 GO:0005515
Spst1g02019 2248 SMART arm_5 913 955 IPR000225 GO:0005515
Spst1g02019 2248 SMART arm_5 1578 1618 IPR000225 GO:0005515
Spst1g02019 2248 SMART arm_5 190 231 IPR000225 GO:0005515
Spst1g02019 2248 SMART arm_5 825 866 IPR000225 GO:0005515
Spst1g02019 2248 SMART arm_5 1827 1866 IPR000225 GO:0005515
Spst1g02019 2248 SMART arm_5 1536 1576 IPR000225 GO:0005515
Spst1g02019 2248 SMART arm_5 1663 1704 IPR000225 GO:0005515
Spst1g02019 2248 SMART arm_5 406 455 IPR000225 GO:0005515
Spst1g02019 2248 SMART arm_5 662 702 IPR000225 GO:0005515
Spst1g02019 2248 SMART arm_5 1281 1324 IPR000225 GO:0005515
Spst1g02019 2248 Coils Coil 392 412 - -
Spst1g02019 2248 SUPERFAMILY ARM repeat 153 735 IPR016024 -
Spst1g02019 2248 Gene3D - 144 508 IPR011989 -
Spst1g02019 2248 Gene3D - 509 746 IPR011989 -
Spst1g02019 2248 SUPERFAMILY ARM repeat 1295 1710 IPR016024 -
Spst1g02019 2248 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2126 2245 IPR035892 -
Spst1g02019 2248 Gene3D - 747 892 IPR011989 -
Spst1g02019 2248 Gene3D - 1798 1916 IPR011989 -
Spst1g02019 2248 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 631 673 IPR000225 GO:0005515
Spst1g02019 2248 FunFam Coatomer beta subunit 1713 2126 - -
Spst1g02019 2248 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 123 2248 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Spst1g02019 2248 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1477 1711 - -
Spst1g02019 2248 Pfam Armadillo/beta-catenin-like repeat 620 660 IPR000225 GO:0005515
Spst1g02019 2248 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1293 1337 IPR000225 GO:0005515
Spst1g02019 2248 SUPERFAMILY ARM repeat 709 1257 IPR016024 -
Spst1g02019 2248 SUPERFAMILY ARM repeat 1715 2125 IPR016024 -
Spst1g02019 2248 SMART C2_3c 2128 2224 IPR000008 -
Spst1g02019 2248 Gene3D - 1276 1460 IPR011989 -
Spst1g02019 2248 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2127 2248 - -
Spst1g02019 2248 Coils Coil 2247 2248 - -
Spst1g02019 2248 Gene3D - 1917 2123 IPR011989 -
Spst1g02019 2248 CDD C2 2129 2219 - -
Spst1g02019 2248 Gene3D - 895 1266 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02019 Spst-Chr1 28434541 28446244 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02019 583 715 U-box Gene Family AT2G23140 40.741 2.86e-12 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02019 - - gmx:100816765 3815