Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02017 ATGTATATGATTGAATCTGGTGAAAGGCCAACAAGTAATTACTTGGCCAATGTGGTAAAAAATGTCTCAAGTGAAAACCATTTTACTGCTTTTGATACTAAATACATAAAAATGGGAGTCGGAAATTACTTGTCTGATTTCATTGGCACAGGCAGTGGCAACAACCAACACAACACCAAGAACAAGAAGCAATTACAGACTGTAGAGCTGAGGGTGACGATGGATTGTGATGGCTGTGTGCTTAAGGTTAAGAAAACTCTATCTTCATTAGATGGAGTGAAATCGGTGGAGATAAACAGGAAACAGCAGAAAGTGACCGTAACTGGTTATGTGGAACCAAACAAGGTCCTAAAGAAGGCCAAGTCAACAGGGAAGAAGGCTGAGATATGGCCTTACGTGCCTTACAACATGGTGGCAAATCCTTATTCTATTCAAGCTTATGACAAGAAGGCTCCTCCGGGATATGTGAGGAGAGTGGACAACTCTGCCACCATTGGAACAGTGACAACATATCAAGATCCATACACCACCATGTTCAGTGATGAAAACCCAAACGCATGTTCTATCATGTAG 573 0.4154 MYMIESGERPTSNYLANVVKNVSSENHFTAFDTKYIKMGVGNYLSDFIGTGSGNNQHNTKNKKQLQTVELRVTMDCDGCVLKVKKTLSSLDGVKSVEINRKQQKVTVTGYVEPNKVLKKAKSTGKKAEIWPYVPYNMVANPYSIQAYDKKAPPGYVRRVDNSATIGTVTTYQDPYTTMFSDENPNACSIM 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02017 190 SUPERFAMILY HMA, heavy metal-associated domain 65 131 IPR036163 GO:0046872
Spst1g02017 190 CDD HMA 69 128 IPR006121 GO:0046872
Spst1g02017 190 Gene3D - 52 131 - -
Spst1g02017 190 Pfam Heavy-metal-associated domain 70 126 IPR006121 GO:0046872
Spst1g02017 190 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 67 188 IPR045181 GO:0046872
Spst1g02017 190 ProSiteProfiles Heavy-metal-associated domain profile. 65 128 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02017 Spst-Chr1 28409650 28410832 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02017 - - gmx:100778653 276.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02017 1 28409650 28410832 Spst1g02017 1 28409650 28410832 ECH
Spst3g01414 3 17616514 17634954 Spst1g02017 1 28409650 28410832 PCT