Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02013 ATGTGCAGGAACTCTGGTAATTCAGAGATGGTAGCTTCAAACAAAAGCACGTTAGAAGAGGTTTTGGACATTGAAAACAATATGGCTCAGTGGGTGCTCAATCCTCCAGATCCACCTTCCATGCTGCGTCAGCTCGTGGACAACGTCAAGGACACCCTCTTACCGCATCCACATCCAAACACATTCTCTTCTCTCAGGAACCAACCCTTTTCCAAACGCGCTTTTGCCTTCTTGCAGGGCTTGTTTCCCATTCTTGCTTCATTCCAAAACTACAATGCCCAAAAGTTCAAGTGCGATTTCATGGCCGGTCTAACCCTCGCAATCTTCGCCATTCCTCAGTGTATGGGAAATGCAACATTGGCGCAGCTAAGTCCAGAATATGGCCTCTACACAGGAATTGTGCCACCTCTTATTTATGCTTTGCTAGCGAGTTCAAGGGAGATAGTGATTGGACCAGGATCTGTAGATTCACTGCTACTTTCCTCAATGATTCAGACATTGAAGTTTCCAATTCATGATTCTATCACATACACTCAGCTTGTTTTCACTGTAACTTTTTTTGCGGGCATCTTTCAAGTTGCTTTCGGCCTCTTTAGGTTTGGTTTTCTGGTGGAATATATCTCCCAAGCCACGATCGTAGGGTTCTTGGCAGCAGCAGCCGTGGGCATTGGACTACAACAATTGAAAGGATTACTTGGGATCGTTAACTTCACCAACAAAACTGCTTTATTTTCCGTCGTCAAATCTCTTTGGACATCCTTCAAAAACCAATCAGCGTGGCATCCCTACAATTTCATTATTGGAATCTCATTTCTCTGTTTCATCCTATTTACCAGATTCCTGGGGAGAAGGAACAAGAAACTTATCTGGTTATCACACGTTGCTCCTCTCCTTTCTATTATTGTATCCTCTGTCATTGCGTACAAAATAAATGTTCATGAGCATCAAGTGAAGGACTACAGAGTTGAAGTGTTGGGACCAATTAAAGGAGGGAGCTTGAATCCAAGCTCACTCCATCAGTTAACATTTGATAGCAAAGTTGTGGGGCATTTGATCAGAATAGGGTTCACCATTGCTATTATTTCACTCACGGGATCTATTGCTGTTGGACGATCCTTTGCATCTCTAAAAGGACACAGTATTGATCCCAACAGAGAAGTGGTATCCTTGGGCATAATGAACATTGTTGGATCCTTAACCTCTTGCTACATTGCATCAGGGTCTTTGTCACGCACTGCAGTAAACTACAATGCTGGGTCAGAAACAATGGTGTCGAACATAGTGATGGCATTGACGGTGCTCTTGTCACTTAAATTTTTGACAGGGCTTTTATATTTTACTCCGAAAGCAATCTTAGCAGCAATAATTCTGTCGGCTGTGCCAGGACTGATTGACCTAAAGAAAGCATGTGAAATTTGGAAGGTTGATAAAATGGATTTCCTTGCTTGTGCTGGAGCCTTCTTGGGAGTCTTGTTTGCATCTGCAGAAATAGGCCTTGCAATTGGGATCACGATATCATTCGCGAAGATAATTCTAACCTCAATTCAACCTGCTATTGCGGTTATTGGAAGGCTTCCAGGAACCGATTCATTCGGCGATGTTCAACAGTATCCAATGGCACTCAACATTCCTGGAGTGTTCATCGTGTCTCTAAAATCTGCATGGCTTTGTTTTGCAAATTCAAATCTGGTGGAGGAAAGGATTGAGCGATGGGTGACCAATGAAAAAGCTAAGCATGGGAAAGGAGGAGAAAGAACCTTCCATCACGTCATCATTGATGCCTCAAGTCTAACGAATATTGACACCGCGGGAATTGCTTCTCTGGTGGAGCTGAATAAAAATCTGACTTCACGTGGAGTAAAGTTAGCTATCGCTAACCCTAGGTGGCATGTAATTCACAAGCTAAGATTATCTAACTTCGTCACCAAAATTGGAGGAAGGGTTTTCCTTTCTGTGGGAGAAGCAGTAGATGCCTGTCTTGGCACTAAAATGGTTTCTGTATAA 2004 0.4306 MCRNSGNSEMVASNKSTLEEVLDIENNMAQWVLNPPDPPSMLRQLVDNVKDTLLPHPHPNTFSSLRNQPFSKRAFAFLQGLFPILASFQNYNAQKFKCDFMAGLTLAIFAIPQCMGNATLAQLSPEYGLYTGIVPPLIYALLASSREIVIGPGSVDSLLLSSMIQTLKFPIHDSITYTQLVFTVTFFAGIFQVAFGLFRFGFLVEYISQATIVGFLAAAAVGIGLQQLKGLLGIVNFTNKTALFSVVKSLWTSFKNQSAWHPYNFIIGISFLCFILFTRFLGRRNKKLIWLSHVAPLLSIIVSSVIAYKINVHEHQVKDYRVEVLGPIKGGSLNPSSLHQLTFDSKVVGHLIRIGFTIAIISLTGSIAVGRSFASLKGHSIDPNREVVSLGIMNIVGSLTSCYIASGSLSRTAVNYNAGSETMVSNIVMALTVLLSLKFLTGLLYFTPKAILAAIILSAVPGLIDLKKACEIWKVDKMDFLACAGAFLGVLFASAEIGLAIGITISFAKIILTSIQPAIAVIGRLPGTDSFGDVQQYPMALNIPGVFIVSLKSAWLCFANSNLVEERIERWVTNEKAKHGKGGERTFHHVIIDASSLTNIDTAGIASLVELNKNLTSRGVKLAIANPRWHVIHKLRLSNFVTKIGGRVFLSVGEAVDACLGTKMVSV 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02013 667 ProSitePatterns SLC26A transporters signature. 125 146 IPR018045 GO:0008271|GO:0008272
Spst1g02013 667 PANTHER SULFATE TRANSPORTER 54 659 IPR001902 GO:0016020|GO:0055085
Spst1g02013 667 Pfam STAS domain 537 655 IPR002645 -
Spst1g02013 667 NCBIfam sulfate permease 83 652 IPR001902 GO:0016020|GO:0055085
Spst1g02013 667 SUPERFAMILY SpoIIaa-like 543 659 IPR036513 -
Spst1g02013 667 ProSiteProfiles STAS domain profile. 556 659 IPR002645 -
Spst1g02013 667 FunFam Sulfate transporter 31 516 662 - -
Spst1g02013 667 Pfam Sulfate permease family 96 484 IPR011547 GO:0016020
Spst1g02013 667 CDD STAS_SulP_like_sulfate_transporter 537 650 - -
Spst1g02013 667 Gene3D STAS domain 516 661 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02013 Spst-Chr1 28362643 28369801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02013 10 664 Inorganic Solute Cotransporters AT5G10180 53.272 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02013 K17469 - gmx:100817841 1154.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02013 1 28362643 28369801 Spst1g02013 1 28362643 28369801 ECH
Spst1g02013 1 28362643 28369801 Spst9g01650 9 16697714 16707279 ECH