Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02004 ATGTGGCCATGCTCATGTGATGCTGTGGATACGTGTCAGTTTTCCATAGGATCACCATCATCGCATAGTGGAATCATTGAAGTTGACGAGGGAAACAGGTTCTTCTCTTTGTTTGCAATTTTCACTTGTTTAAGAATATCTAGTAGAGCTAGCATGACAACAGTTATGGATATGTACAATAACAGTTGCATCATGTTATCAGATTTCTTAGACCCTTGTAATGATCAAGAGCTGATGAAAGCACTTGAACCTTTTATGAAAAGTGATTCATCTAGCAGTTCCTCAATAACTTACCATTCATCATCATTTCCAAACTTCTCAAGCTACGACCAAAAGGGTCTGAACCAAGCTAGTTCCATCAAACTGAACCAACTCACCCCATCTCAAATATTCCAGATTCAAGCCCAAATCCAGGTTCCACGAGCTCAGTTTCTTAGCCCAAAGCCCGTTCCCATGAAGCAGGTGGGTGGTCGTGCTCTTTCCAAATCCACAAAGCTTTACCGTGGTGTGAGGCAGAGACACTGGGGCAAGTGGGTGGCTGAGATCAGACTCCCCAAGAATCGCACTCGTCTCTGGCTTGGTACATTCGAAACCGCTGAAGAAGCAGCGTTGGCATACGACAACGCGGCGTTTAAGCTGAGAGGAGAAAACGCGAGGCTCAACTTCCCTCATCTACGTCACCATGGAGCAAGCGTCTATGGTGAGTTTGGGACCTACAAGCCTCTCCCCTCTGCGGTGGACGCAAAGCTGGAGGCCATTTGTCAAAGCTTGGCCATCAATTCGCAGAAACATCAAGGGGAAACACTGACACACAAAGAAGAAACAACAACAACAATAACATCGGAGTTTGAGGATGTTAAGGTGGAGAACCAAACAGCATCCTCGCCCTTGTCGGATGAATCTTCTTCTTCTTCTCCTGGGTCCTCTTCACCAGAATCCGATATCACTTTCTTGGATTTCTCGGATTCTTATGAAGCAATGGAGAATCTTGGGTTGGACTTGGAGAAGTACCCTTCTGTGGAGATTGATTGGGCAGCTTTATCTGAGTCATGA 1053 0.4568 MWPCSCDAVDTCQFSIGSPSSHSGIIEVDEGNRFFSLFAIFTCLRISSRASMTTVMDMYNNSCIMLSDFLDPCNDQELMKALEPFMKSDSSSSSSITYHSSSFPNFSSYDQKGLNQASSIKLNQLTPSQIFQIQAQIQVPRAQFLSPKPVPMKQVGGRALSKSTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEEAALAYDNAAFKLRGENARLNFPHLRHHGASVYGEFGTYKPLPSAVDAKLEAICQSLAINSQKHQGETLTHKEETTTTITSEFEDVKVENQTASSPLSDESSSSSPGSSSPESDITFLDFSDSYEAMENLGLDLEKYPSVEIDWAALSES 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02004 350 Gene3D AP2/ERF domain 166 224 IPR036955 GO:0003700|GO:0006355
Spst1g02004 350 Pfam AP2 domain 167 216 IPR001471 GO:0003700|GO:0006355
Spst1g02004 350 CDD AP2 165 225 IPR001471 GO:0003700|GO:0006355
Spst1g02004 350 PRINTS Ethylene responsive element binding protein signature 189 205 IPR001471 GO:0003700|GO:0006355
Spst1g02004 350 PRINTS Ethylene responsive element binding protein signature 167 178 IPR001471 GO:0003700|GO:0006355
Spst1g02004 350 SUPERFAMILY DNA-binding domain 166 224 IPR016177 GO:0003677
Spst1g02004 350 MobiDBLite consensus disorder prediction 285 316 - -
Spst1g02004 350 ProSiteProfiles AP2/ERF domain profile. 166 223 IPR001471 GO:0003700|GO:0006355
Spst1g02004 350 FunFam Ethylene-responsive transcription factor 2 165 224 - -
Spst1g02004 350 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 57 348 - -
Spst1g02004 350 SMART rav1_2 166 229 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02004 Spst-Chr1 28316147 28317533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02004 55 349 AP2-EREBP Transcription Factor Family AT4G39780 49.834 3.31e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst1g02004 AP2 1.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02004 K09286 - gmx:106796800 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02004 1 28316147 28317533 Spst1g02004 1 28316147 28317533 ECH