Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02003 ATGACGCAGCAGAATGTGGTAGTACCTGACACCACATCTGGAGTTTCCCTAACAGTTTCTCCAACACCAGCACAAAAAAAGCCACCACCAGCACCAGGAGGATACATTTCCATTTCAAGGAGGAGGAGGGTTTTGAAGAACCTTGAAATTAATGGAGACCAAAGAGTGAATGCATGGGTTGAGTCCATGAGAGCCTCATCTCCTACCCATCTTAAATCCACACCTTCTTTATCTCAGGACCATAACTCCTGGATTCTTCACCATCCGTCGGCATTAGACATGTTTGACCAAATTGTTGACGCGTCAAAGGGAAAACAAATTGTCATGTTTCTGGACTATGATGGCACACTGTCCCCTATAGTTGAAGATCCTGACCGTGCTTTCATGTCCCATTCGATGAGAAAAACAGTGAAGAAACTTGCTAGGTGTTTTCCTACTGCCATAGTGACTGGCAGATGCAAAGACAAGGTATACAATTTTGTTCAGTTGGCAGAGCTATATTATGCAGGAAGCCATGGCATGGATATTAAAGGGCCAACAAGAAGCTCCAAATACAACAAAGATAGCAAAGCTGAGGCAATTCTTTTTCAACCTGCCAGTGATTTTCTTCCCATGATAGATGAGGTGTACCAACAGTTAGTTGAGAAGACAAAATCAACTCCTGGAGCTATGGTTGAGAACAACAAGTTCTGCCTCTCTGTTCATTTTCGTTGTGTTGATGAAAAGAAATGGAGTGACCTGGCACGCCAAGTGAAATCAGTTTTAAAGGAGTACCCGAAGCTCCGACTTACCCAAGGAAGAAAGGTGCTAGAGATTCGTCCCACTATTAAATGGGACAAAGGGAAGGCCCTGGAATTTTTACTAGAGTCCCTTGGTTTGGCCAATTGTAGTGACGTCTTTCCTGTTTATATTGGCGATGATCGATCCGATGAAGATGCTTTCAAGAAATTGAGAGACAGAGGACAGGGTTTTGGCATTCTTGTCTCCAAATTTCCAAAGGACACTAGTGCATATTACTCTTTACAAGAACCAGACGAGGTGATGAGCTTTCTTCAACGCTTGGTGGAGTGGAAACATATGTCCCAACGAGCACGTCAGAACAATTTCCTAGATGAAGAAGACACACTTAAGTTGGAGATAATTCCATCACCATCAATGATTATTGATCGAATACTTGGAGACTCAAGGATGAAGATGGCCCCTTGTCAACTACCTTGTTACAAATTTCTGAAGCTGACTCAAAAGTTGCAGTTGTGGGTTAGGCCGGCTCTAGAGGTAGCATCAAGGATTCATTCATGTACTGCAGTAGACCAACCAAAGAAAGACAGAGAAGCAACAGACAAGGGAGTAACGCTAATAATCACTAGTGTATTGTGCCAGAGTTGA 1386 0.4315 MTQQNVVVPDTTSGVSLTVSPTPAQKKPPPAPGGYISISRRRRVLKNLEINGDQRVNAWVESMRASSPTHLKSTPSLSQDHNSWILHHPSALDMFDQIVDASKGKQIVMFLDYDGTLSPIVEDPDRAFMSHSMRKTVKKLARCFPTAIVTGRCKDKVYNFVQLAELYYAGSHGMDIKGPTRSSKYNKDSKAEAILFQPASDFLPMIDEVYQQLVEKTKSTPGAMVENNKFCLSVHFRCVDEKKWSDLARQVKSVLKEYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGLANCSDVFPVYIGDDRSDEDAFKKLRDRGQGFGILVSKFPKDTSAYYSLQEPDEVMSFLQRLVEWKHMSQRARQNNFLDEEDTLKLEIIPSPSMIIDRILGDSRMKMAPCQLPCYKFLKLTQKLQLWVRPALEVASRIHSCTAVDQPKKDREATDKGVTLIITSVLCQS 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02003 461 Pfam Trehalose-phosphatase 110 344 IPR003337 GO:0003824|GO:0005992
Spst1g02003 461 Gene3D - 107 205 IPR023214 -
Spst1g02003 461 Gene3D - 207 370 IPR023214 -
Spst1g02003 461 MobiDBLite consensus disorder prediction 1 36 - -
Spst1g02003 461 FunFam Trehalose 6-phosphate phosphatase 107 194 - -
Spst1g02003 461 MobiDBLite consensus disorder prediction 1 22 - -
Spst1g02003 461 FunFam Trehalose 6-phosphate phosphatase 205 364 - -
Spst1g02003 461 SUPERFAMILY HAD-like 108 357 IPR036412 -
Spst1g02003 461 CDD HAD_TPP 108 348 - -
Spst1g02003 461 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 33 365 IPR044651 GO:0004805|GO:0005992
Spst1g02003 461 NCBIfam HAD-IIB family hydrolase 109 320 IPR006379 -
Spst1g02003 461 NCBIfam trehalose-phosphatase 105 355 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02003 Spst-Chr1 28300534 28304295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02003 103 354 Trehalose Biosynthesis Gene Families AT1G70290 26.199 1.83e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02003 K01087 - gmx:100794430 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02003 1 28300534 28304295 Spst1g02003 1 28300534 28304295 ECH