Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01995 ATGTGCGGAATCCTCGCAGTGTTGGGTTGCGTCGACAACTCTCAGGCCAAGCGCGCTCGCATCATCGAATTGTCTCGCAGGCTGCGGCACAGAGGTCCCGATTGGAGTGGCATACATTGCCATGATGATTGTTACCTTGCTCATCAAAGGCTCGCTATTGTTGACCCTACTTCGGGGGATCAACCTTTGTACAACGAAGACAAGACTGTTATTGTCACTGTAAATGGGGAGATATACAACCACAAGCAATTGAGAGAGAAACTGAGTTCCCATCAATTTCGAACTGGTAGTGATTGTGAAGTGATTGCCCATCTTTATGAAGAATATGGTGAGGAATTTGTTAACATGCTGGATGGGATGTTCGCCTTTATTCTTCTTGATACTCGTGATAAAAGTTTTATTGCTGCTCGTGATGCTATTGGCATTACCCCTCTTTATTTGGGATGGGGTCATGATGGATCAACATGGTTTGCATCTGAAATGAAAGCTCTGAGTGATGATTGTGAGAAATTCATGTCATTTCCTCCAGGGCATATATATTCCAGCAAACAGGGAGGATTAAGAAGGTGGTACAATCCACCATGGTTTTCAGAGGATATTCCATCAACTCCGTATGATCCAATACTTCTGCGTAAGACCTTCGAGAGGGCTGTAGTTAAGAGAATGATGACTGATGTACCCTTTGGAGTTCTTTTGTCCGGAGGATTGGACTCATCACTTGTTGCTTCTGTGGTCAATCGTCATTTGGCAGAATCTGATGCAGCTCGACAATGGGGATCACAGTTGCATACTTTCTGCATCGGTTTAAAGGGCTCTCCGGACTTGAAAGCTGCAAAAGAGGTAGCAGATTATCTTGGTACTCGTCACCACGAACTTTATTTCACGGTTCAGGAAGGTATAGATGCACTTGAAGAAGTCATTTACCATATTGAAACATATGATGTAACGACTATCAGAGCAAGTACTCCAATGTTTCTTATGTCCAGGAAAATTAAAGCCTTGGGAGTGAAAATGGTTCTTTCTGGAGAAGGTTCAGATGAAATATTTGGAGGTTATCTGTATTTTCATAAGGCTCCTAACAAGAAAGAGTTTCATGAAGAAACGTGTCGAAAAATTAAAGCTCTTCATCTTTATGACTGCCTGAGAGCAAATAAATCGACTGCAGCATGGGGTGTAGAGGCACGTGTACCATTCTTGGATAAAGAATTTATCGACGTAGCGATGGATATAGATCCGGAGTGGAAAATGATAAGGCGTGATCTTGGAAGGATAGAGAAGTGGGTATTACGCAATGCATTTGATGATGAAAAGAATCCATATTTACCAAAGCACATATTGTACAGGCAGAAGGAACAGTTCAGTGATGGGGTTGGTTACAGCTGGATTGATGCCCTTAAGGATCACGCTGACAAACAAGTCCCTGATGCAACGATGCTTGCTGCCAAATTTATTTACCCTGAGAACACTCCTACAACAAAAGAAGGATACCTCTACAGGACAATATTTGAGAAGTTCTTTCCAAAGAATGCTGCAAGGGCAACAGTTCCAGGAGGTCCTAGTGTGGCATGCAGTACTGCAAAAGCTGTGGAATGGGATGCAGCATGGTCCAAAAATCTTGACCCTTCTGGTCGTGCCGCGCTTGGTGTCCATGAAGCTTCTTATCAGGATGTAGAGGATATCAAACTTGAAGAGCCCAAAAATGGACCCCTTTAA 1713 0.432 MCGILAVLGCVDNSQAKRARIIELSRRLRHRGPDWSGIHCHDDCYLAHQRLAIVDPTSGDQPLYNEDKTVIVTVNGEIYNHKQLREKLSSHQFRTGSDCEVIAHLYEEYGEEFVNMLDGMFAFILLDTRDKSFIAARDAIGITPLYLGWGHDGSTWFASEMKALSDDCEKFMSFPPGHIYSSKQGGLRRWYNPPWFSEDIPSTPYDPILLRKTFERAVVKRMMTDVPFGVLLSGGLDSSLVASVVNRHLAESDAARQWGSQLHTFCIGLKGSPDLKAAKEVADYLGTRHHELYFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKALGVKMVLSGEGSDEIFGGYLYFHKAPNKKEFHEETCRKIKALHLYDCLRANKSTAAWGVEARVPFLDKEFIDVAMDIDPEWKMIRRDLGRIEKWVLRNAFDDEKNPYLPKHILYRQKEQFSDGVGYSWIDALKDHADKQVPDATMLAAKFIYPENTPTTKEGYLYRTIFEKFFPKNAARATVPGGPSVACSTAKAVEWDAAWSKNLDPSGRAALGVHEASYQDVEDIKLEEPKNGPL 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01995 570 Pfam Asparagine synthase 210 361 IPR001962 GO:0004066|GO:0006529
Spst1g01995 570 PIRSF Asn_synthetase_glu-h 1 361 IPR006426 GO:0004066|GO:0006529
Spst1g01995 570 PIRSF Asn_synthetase_glu-h 356 516 IPR006426 GO:0004066|GO:0006529
Spst1g01995 570 FunFam Asparagine synthetase [glutamine-hydrolyzing] 195 514 - -
Spst1g01995 570 PANTHER ASPARAGINE SYNTHETASE 1 555 - -
Spst1g01995 570 NCBIfam asparagine synthase (glutamine-hydrolyzing) 2 367 IPR006426 GO:0004066|GO:0006529
Spst1g01995 570 FunFam Asparagine synthetase [glutamine-hydrolyzing] 2 192 - -
Spst1g01995 570 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 1 195 IPR029055 -
Spst1g01995 570 CDD Asn_Synthase_B_C 211 456 IPR001962 GO:0004066|GO:0006529
Spst1g01995 570 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 210 483 - -
Spst1g01995 570 Gene3D HUPs 195 514 IPR014729 -
Spst1g01995 570 Pfam Glutamine amidotransferase domain 48 165 IPR017932 -
Spst1g01995 570 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 2 192 IPR029055 -
Spst1g01995 570 CDD AsnB 2 192 IPR033738 -
Spst1g01995 570 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 2 185 IPR017932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01995 Spst-Chr1 28160434 28165597 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01995 69 164 PRT Gene Family AT2G16570 33.962 1.34e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01995 K01953 - gmx:732660 1112.83