Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01990 ATGTCCAGTTCCAACTCCTACCCAAACGCGGATCCGACCCGAATACTAAACTCTCAGGATCCAACTACCACCGCAGACCCTCAGCTTCCGCTTCGGAACCTCTCCCAGATTCGGACCAGAATTGATTCTCTACAACACTTTCTATCTCAATCCATCAACACCAACACTCCTCTCACCACCGATCAAATCGCCATGGTCTCCACTCACATCATTTCCTCCATCCACCAAATCATAGTCAACGGCGCCGCCCTCGTAACTTACTCCCAACATTCCACATCCGCCGCCGTCACATCAGACGCGCCGTCGTATCCGAAGCCGGAACTCTCCACCTCTGATAAAAACAAGCAACTACTCGATTCCAAAATTGAATCTCCCGAGGACGACGGCAGCGTCAAAAACGACGTGGTGGATAGCGAAATCGTGGAACTCGATGCCGTGGAACTCCTCGCGGAGCACATCCACTTCTGCGAGATCTGCGGGAAAGGCTTCCGGCGCGACGCGAACCTCCGCATGCACATGCGCGCTCACGGGGACCAGTTCAAGACGCCGGAGGCGCTGGCGAGGCCGTCGGCAACCGGCACGAGGCGTCGTGCGGTGCAGTTTTCGTGTCCGTTCGAAGGCTGCAACAGGAACAAGCTCCATCGGCGGTTCCGGCCGCTGAAGTCGGCGGTGTGCGTGAAGAACCACTTCAAGCGGAGCCACTGTCCGAAGATGTATTCGTGCACGCGGTGCCACAAGAAGCACTTCTCGGTGCTCTCGGATTTGAAGAGCCACGCGAAGCACTGCGGAGAGTGCAGGTGGAAGTGCACGTGCGGGACCACGTTCTCGAGGAAGGATAAGTTGTTCGGCCACATTGCGCTGTTTGAGGGCCACGCGCCTGCGCTCGCCTGCGACGAAGAAGATAAAGGGAAGCAAGTGGTGGAGGGTGATGACGAAGATCCAATGATGATGACTGAAAGTGGATTTGAATTGGCTAATTGCTTTGGGGATGAAGAGTTGCCGGAAGGGTTTTTTGATGATTTTGGGTCCATCGATGACTACTGTTTAAGGGAAGTGCTAGGGTTTCCTAATAATTGA 1077 0.5487 MSSSNSYPNADPTRILNSQDPTTTADPQLPLRNLSQIRTRIDSLQHFLSQSINTNTPLTTDQIAMVSTHIISSIHQIIVNGAALVTYSQHSTSAAVTSDAPSYPKPELSTSDKNKQLLDSKIESPEDDGSVKNDVVDSEIVELDAVELLAEHIHFCEICGKGFRRDANLRMHMRAHGDQFKTPEALARPSATGTRRRAVQFSCPFEGCNRNKLHRRFRPLKSAVCVKNHFKRSHCPKMYSCTRCHKKHFSVLSDLKSHAKHCGECRWKCTCGTTFSRKDKLFGHIALFEGHAPALACDEEDKGKQVVEGDDEDPMMMTESGFELANCFGDEELPEGFFDDFGSIDDYCLREVLGFPNN 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01990 358 MobiDBLite consensus disorder prediction 95 111 - -
Spst1g01990 358 SMART c2h2final6 239 261 IPR013087 -
Spst1g01990 358 SMART c2h2final6 201 234 IPR013087 -
Spst1g01990 358 SMART c2h2final6 154 176 IPR013087 -
Spst1g01990 358 SUPERFAMILY beta-beta-alpha zinc fingers 151 177 IPR036236 -
Spst1g01990 358 MobiDBLite consensus disorder prediction 95 115 - -
Spst1g01990 358 FunFam Zinc finger 45-like 151 177 - -
Spst1g01990 358 Gene3D Classic Zinc Finger 154 177 - -
Spst1g01990 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 154 181 IPR013087 -
Spst1g01990 358 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 18 310 IPR044300 GO:0010044|GO:0010447
Spst1g01990 358 ProSitePatterns Zinc finger C2H2 type domain signature. 156 176 IPR013087 -
Spst1g01990 358 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01990 Spst-Chr1 28135081 28136157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01990 139 299 C2H2 Transcription Factor Family AT1G34370 61.818 3.55e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst1g01990 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01990 - - gmx:100809135 541.576