Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01970 ATGAAGAGACTTAGCAGCTCAGATTCTTCTTCCACTCCCCTCATCACAATTTGCCCATCAACAGAGGAACATAGTCCGAGGAACAGCCAGCAGCACGTGTATGGTAGGGAGTTCCAATCGATGATGCTTGAGGGACTTGACGAGGAAGGGTGTCTTGAAGAAGTAGGGAATCAATCTGAGAAGAAACGTCGACTGAGTGTAGATCAAGTGAAGGCTTTGGAGAAGAACTTCGAGGTCGAAAACAAGCTTGAACCTGAGAGGAAGGTCAAGCTTGCCCAAGAACTTGGGTTGCAACCTAGACAAGTGGCCGTTTGGTTCCAAAACCGTCGAGCAAGATGGAAAACCAAACAATTGGAGAGAGATTACGGTGTCCTCAAAGCCAATTTTGATGCTCTCAAGCTTAACTATGACACCCTTAATCATGACAACGAGGCTTTACGAAAGCAGATAAAGGAACTAAAATCGAGGTTGGAAGAAGACAACACAGGAAACGGGGTTTCCGTGAAGAAGGAGATAACGATGCCAGACTCGGAAGACAAAACAACGATGGAACATAGTAAGAGCGAGCCCAGTTCGGAATCCGAGGATCAGTTGAACTACGAGTGTTTGAACAACAACATCAAGGATTGTGTCGGAGGCGCTTCGCTCTTCCCAGTGGACTTCAAAGACGGTTCTTCCGACAGCGATTCGAGCGCGATCTTGAACGAAGAGAACAACTGCAGCCCAATAACTGAGCATCTCTTGCTGTCTCGGGAATCAATCTCAATGAACTGTTTGCAGTTCCAGAAAGCGTATCAGGCGCAGTACGTGGTGAAGATGGAGGAGCACAATTTCTTCAGCGCCGACGAGGCCTGCAATTTCTTTTCCGATGAACAAGCTCCAACGTTGCAGTGGTGGAGCTGA 903 0.4762 MKRLSSSDSSSTPLITICPSTEEHSPRNSQQHVYGREFQSMMLEGLDEEGCLEEVGNQSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANFDALKLNYDTLNHDNEALRKQIKELKSRLEEDNTGNGVSVKKEITMPDSEDKTTMEHSKSEPSSESEDQLNYECLNNNIKDCVGGASLFPVDFKDGSSDSDSSAILNEENNCSPITEHLLLSRESISMNCLQFQKAYQAQYVVKMEEHNFFSADEACNFFSDEQAPTLQWWS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01970 300 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Spst1g01970 300 MobiDBLite consensus disorder prediction 157 197 - -
Spst1g01970 300 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 42 267 IPR045224 GO:0003700
Spst1g01970 300 SMART HOX_1 59 120 IPR001356 GO:0003677
Spst1g01970 300 MobiDBLite consensus disorder prediction 1 31 - -
Spst1g01970 300 FunFam Homeobox-leucine zipper protein HAT5 54 118 - -
Spst1g01970 300 Pfam Homeodomain 61 114 IPR001356 GO:0003677
Spst1g01970 300 Gene3D - 55 123 - -
Spst1g01970 300 PRINTS Lambda-repressor HTH signature 96 112 IPR000047 GO:0003677
Spst1g01970 300 PRINTS Lambda-repressor HTH signature 87 96 IPR000047 GO:0003677
Spst1g01970 300 Pfam Homeobox associated leucine zipper 116 157 IPR003106 GO:0006355|GO:0043565
Spst1g01970 300 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Spst1g01970 300 Coils Coil 129 163 - -
Spst1g01970 300 CDD homeodomain 61 117 IPR001356 GO:0003677
Spst1g01970 300 MobiDBLite consensus disorder prediction 172 194 - -
Spst1g01970 300 SUPERFAMILY Homeodomain-like 45 118 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01970 Spst-Chr1 27851546 27852825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01970 1 300 Homeobox Transcription Factor Family AT4G40060 48.896 1.56e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst1g01970 Homeodomain 2.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01970 K09338 - gmx:100777924 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01487 3 18336689 18338326 Spst1g01970 1 27851546 27852825 PCT