Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01969 ATGAAGAAAACGTCGCATCCTAAACCCATCCACACTCCCTACGCCGCTAATCGCGGCCATGATATTCACGCTCACCCATCACCACACGGCTTTTCCGGTCCGCGTCCCATCTTCCACCGGCCATTCCACCAATGGAGGCCTCTCGTTCACCCCCACGCCGCCCGCCTCCACCGTCCTCCGGAGACTTATTTCAAGGTTGAACTCCGACTCGGCCTCCGCCCCCTTTGCCGCGAAGAGGTCGAGGCCCTGATAGAAGAATGCGAGCACAAGGCAAAGACCTTCACTTTCTACCCCACCGACGACGTCGCGGCCGTGCTCAGTTATCAAAACTGGGAGCAGGCGCGAGACGCGGCGGCTTGGTTCTGGGAGTCGCTGCTGTTGGAGAAACACGATTACACGCCGGCGTTGGACTCCAACGTTGTCGTGATGGGCGATCTGGATGGTCGCCTTCGCCTGTTGTTCGCGAGGCACGTGAAGAAGTTGATGAAGGGGAAGGAGGTGAAGCGGTGGGTGGAGGAGAGTGATCGGTTGTCGAAGGAGATTGCCAGGATTTCAACTTTGCTGAGTAAGCCCTTGCACATTAACTCGGTTAACCGCTTTCGGGAGAAGAAAGAAGGGCTTGTTACTGAGATGAACCTGGTTGAAAGGAGGTTGAAGGAGTTCGAGTCTGCCATGGAGTGTATATTGAAGTATCTGGAGGAGAAGGCTGTTGACGTGGATAGTGAAGAGTGTGTGTCTGTGTTTAAGTTTGATGGAGGTTTTGATTGGAAGAGGATTCACTGTCTGATCAAAAGGGAGTGTCGGCGTCTGGAGGATGGGTTGCCCATTTATGCTTACCGGAGGGATATTCTTCTGAATGTACTTTATCAGCAGATAATGGTATTAATAGGAGAGACTGGTTCCGGGAAGAGTACACAATTGGTACAGTTTCTTGCTGATTCTGGCATTGGTGCTGATGAATCCATTGTATGCACCCAACCTCGCAAGATTGCTGCCAAATCAGTGTCTCAAAGGGTCCAGGAAGAAAGCAGCGGATGTTACGAAGGGCAATCAATCAAATATTCTACATTTTCATCCTTGCACGAGTTTGATTCCAGGATAACATTCATGACAGATCACTGTTTGTTGCAGCACTACATGAGTGATAAGAATTTGTCGGGGGTATCATGCATCATAATTGATGAGGCTCATGAGAGGAGCCTAAATACAGATTTACTGATGACTTTGTTGAGAAGCTTACTTTATAGGAGGCGTGAAATGCGGCTTATCATTATGTCTGCTACAGCGGATGCAACACAGCTATCTGATTACTTTTATGGTTGTGGAATTTTTCATGTGTTTGGGAGAAACTTTCCAGTGGATATCAAGCATGTTCCTTCTGACTATGCTGGACATTCTGGTTCTGCTATTGCCTCATATGTTTCTGATGTTGTCAGAAAGGCAACTGAAATTCACAGAACAGAGAAAGAGGGAACTATTCTTGCCTTTTTGACCTCTCAGATAGAAGTAGAATATGCCTGTGAAAAGTTTATAGCTTCCTCTGCAGTCGCTCTTCCCTTGCATGGGAAACTTTCATCCGAAGAGCAATTTCGTGTTTTTCAGAACTACCCTGGAAAGAGAAAAGTGATATTTTCAACAAATCTTGCGGAGACATCACTTACAATTCCTGGTGTTAAGTATGTGGTTGATTCTGGTTTTGTTAAAGATTGCAGATTTGATCCTGCCAGTGGGATGAATGTACTTAAGGTTTGCTGGATTAGTCAGAGCTCTGCTAATCAACGGGCTGGTCGTGCTGGGAGGACCGAGCCTGGTGTGTGCTATAGACTGTACTCAGAAGCTGATTATCAATCTATGGACATAAATCAAGAGCCAGAGATTCGGAGAGTTCATCTTGGTGTAGCAGTTTTGAGGATCCTTGCTTTAGGAGTGAAGAATGTGCAGGATTTTGATTTTGTGGATGCTCCAAGTTCGAGCTCTATTGATATGGCAATCAGGAATCTAATTCAGTTAGGAGCCATTGAGCTGAAGAATAATGTTCATGATTTAACTAGTGAGGGTTGGTACCTGGTAAAAATGGGAATTGAACCCAGGCTTGGTAAACTTATTCTTGGCTGTTTAAAACATGGTTTGGGCAGGGAAGGAATTGTTCTTGCTGCTGTGATGGCCAATGCTAGTAGCATTTTTTGCAGAGTTGGCAGTGAACTCGATAAACAAAGATCTGATTGTCTGAAGGTGCAATTTTGCCATTGCGATGGTGACCTCTTTACTCTTCTCTCTGTGTACAAGGAATGGGAAAGTTTGCCTCGTGAAAGGAAGAACAAATGGTGTTGGGAAAACAGCATCAATGCCAAATCCATGAGGAGGTGCCTAGACACAATTTTGGAGTTAGAAAGTTGCTTTGAGCGAGAACACGACCTTATTACTCCCAGGGGCTGGCGTTGGGACCCTTATATACCCTCTAATCATGATAAGAATTTGAAAAGGGTTATCCTGTCCTCGCTTGCCGAGAATGTAGCCATGTACTCTGGCTGCAAACAACTTGGTTATGAAGTGGCACAAACTGGGCAATATGTTCAACTGCATCCATCTTGTTCATTGCTTGTATTTGCTCAGAAACCAAGTTGGGTGGTTTTTGGTGAGCTTCTTTCTGTCTCTAATCAATATTTGGTCTGTGTGACTGCATTTGACTTTCAATCACTATACAACCTTCACCCTGCTCCCTTGTTTGATGTATCCAAAATGGAAGAGCGGAAGTTGCAAATGAAGACATTGTGTGGTCTTGGCTCTATTCTTCTCAAGAGACTTTGTGGAAAAGCCAACTGTAATTTGTTTGCACTTGTTTCGCGTATAAGGAAAGCTTGTATGGACGAACGCATTTACATTGAAGTGAATGTTGACCAGAATGCAATCCACCTGTTTGCCACTTCAAATGATATGGATACAACCCTTGATTTGGTTAATGGTGCTCTAGAATATGAGAGAAAGTGGTTACGCACTGAATGTATGGATAAGTGTTTGTATCACGGGTCTGGTATTTCTCCACCTGTAGCATTGTTTGGGTCTGGTGCAGAGATAAAATATTTGGAACTTGAGAAACGTTCCTTGAGTATTGATGTATGTCATGCCAACATAAATGCAATGGATGACAAGGAGCTCTTAATGTTTTTAGAGAAGAATACCTCTGGTAGCATCTGTGCTGTGCACAAATTTGCAGGCAATATGAAGGATGAAGATAAGGAGAAGTGGGGCAGGATAACATTTATGTCCCCTGATGTTGCCAAAAGAGCTGCTGAACTAGATGGACGAGAATTTTGTGGCTCCTCCTTGAAAATTGTTCCTTCACAGTTGGGAGGGGATAAAACATTTTCGTTTCCTGCTGTTAAAGCAAAAATTTCTTGGCCTCGTAGGCTTAGTAAGGGATTTGGCATACTTAAATGTGATATAATGGATGTCAATCAAATCTTGAGAGATTTCTACAACCTTGCAATAGGGGGACGATATGTTCGATGTGATGTTGGCATAAAGAGTATGGACAGTGTTGTTATAAGTGGGCTTGACAAAGAGCTCTCGGAAGCTGAAATATTGAATGTGCTAAGAACTGCTACAAATAGAAGGATTTTGGATTTTTTCTTGGTGAGAGGGAATGCTGCTGAAAATCCACCATGCAGGGCTTTGGAAGAGGCGCTCCTTAAAGAAATTTACCCCTCTTTACCCAAAAGGAACCCTCACATTAGTTCTTGCCGAGCTCAGGTGTTTGTACCCGAGCCTAAGGATGCTTTTATGAGAGCTTTAATCAGTTTTGATGGACGATTGCATTTAGAGGCAGCAAAAGCTTTGGAGCAAATTGAAGGAATGGTGTTACCTGGATGTCTTTCATGGCAAAAGATAAAGTGCCAGCAGTTATTTCATAGCTCCTTGATATTTCCTACACCAGTGTTTCGTGTTATTAAGGAACAACTGGATGAAGTACTTGCAAGCTTCAGGAATTTGAAAGGTCTTGAATGCAACCTGGACAGGGCAGTTAATGGTTCCTACCGAGTTAAGATAACTGCTAACGCCACGAAGACTGTAGCAGAAGTAAGAAGACCTCTGGAAGAACTATTGAGAGGGAGAACCATTGAGCATGACAGCCTCACACCTGCAATTCTCCAGCTCATGTTGTCCAGGGATGGCTTTAATCTTAGAAGCTCATTGCAGCAAGAGACTGGAACTTACATTCTTTTTGACAGGCTCAACTTGAATATACGGGTGTTTGGTTCCCCAAACAAGGTTGCTTTGGCTCATGACAAGGTGGTTCAATCACTCCTTTCTCTCCATGAAGAAAAGCAGTTAGAAATCCATCTGAGAGGGAGGGACTTACCTTCTGATTTAATGAAGCAAATGATTAAGAATTTTGGGCCAGATCTGCATGGACTGAAAGCGAGGGTACCAGGGGTAGATCTTTCACTGAACATCCGTCGCCATATAATCAGTCTTCATGGTAGGATGGAGTTGAAACCCAGGGTAGAGGAAATAGTTTTTGAGATTGCTCGTTCAAGCAATCATTTGCTTGAGACATTTGATAATGCTGGACCTAATTGCCCGATTTGCTTGTGCGAGGTTGAGGATGGATACCGACTTGAAGGCTGTGGTCATTTGTTCTGCCGGTTGTGTCTGGTGGAACAATGTGAATCTGCTATTAAAAACCAAGGCACCTTCCCATTATGTTGTACTCACAAGGACTGTGGAGCACACATCCTGCTTGCTGATTTGAGATCTCTCTTATTTGGTGATAAGTTGGAGGATCTTTTCAGGGCTTCTATGGGAGCTTTTGTGGCTACGAGTGGGGGAACTTACAGGTTTTGCCCTTCTCCAGACTGCCCCTCAATTTATCGAGTTGCAGATCCTGGGACTGCTGGTGACCCATTTGTTTGTGGGGCTTGTTACTCAGAGACATGTACCAGGTGCCATTTAGAGTATCATCCATACCTTTCATGCGAGAGATATAAAGAATTAAAGGAAGATCCGGATTCATCTCTGCTAGAGTGGTGCAGAGGGAAAGACCAAGTAAGGAGCTGCTTGGCGTGTGGGTTTGTAATTGAGAAGGTAGATGGGTGCAACCATGTTGAGTGCAAGTGCGGAAAGCATGTGTGCTGGGTTTGCTTAGAGTTCTTCAGTGCTAGTGATGAATGTTACAGCCATTTAAGAACTGTACACATGGCCATCATATGA 5211 0.4439 MKKTSHPKPIHTPYAANRGHDIHAHPSPHGFSGPRPIFHRPFHQWRPLVHPHAARLHRPPETYFKVELRLGLRPLCREEVEALIEECEHKAKTFTFYPTDDVAAVLSYQNWEQARDAAAWFWESLLLEKHDYTPALDSNVVVMGDLDGRLRLLFARHVKKLMKGKEVKRWVEESDRLSKEIARISTLLSKPLHINSVNRFREKKEGLVTEMNLVERRLKEFESAMECILKYLEEKAVDVDSEECVSVFKFDGGFDWKRIHCLIKRECRRLEDGLPIYAYRRDILLNVLYQQIMVLIGETGSGKSTQLVQFLADSGIGADESIVCTQPRKIAAKSVSQRVQEESSGCYEGQSIKYSTFSSLHEFDSRITFMTDHCLLQHYMSDKNLSGVSCIIIDEAHERSLNTDLLMTLLRSLLYRRREMRLIIMSATADATQLSDYFYGCGIFHVFGRNFPVDIKHVPSDYAGHSGSAIASYVSDVVRKATEIHRTEKEGTILAFLTSQIEVEYACEKFIASSAVALPLHGKLSSEEQFRVFQNYPGKRKVIFSTNLAETSLTIPGVKYVVDSGFVKDCRFDPASGMNVLKVCWISQSSANQRAGRAGRTEPGVCYRLYSEADYQSMDINQEPEIRRVHLGVAVLRILALGVKNVQDFDFVDAPSSSSIDMAIRNLIQLGAIELKNNVHDLTSEGWYLVKMGIEPRLGKLILGCLKHGLGREGIVLAAVMANASSIFCRVGSELDKQRSDCLKVQFCHCDGDLFTLLSVYKEWESLPRERKNKWCWENSINAKSMRRCLDTILELESCFEREHDLITPRGWRWDPYIPSNHDKNLKRVILSSLAENVAMYSGCKQLGYEVAQTGQYVQLHPSCSLLVFAQKPSWVVFGELLSVSNQYLVCVTAFDFQSLYNLHPAPLFDVSKMEERKLQMKTLCGLGSILLKRLCGKANCNLFALVSRIRKACMDERIYIEVNVDQNAIHLFATSNDMDTTLDLVNGALEYERKWLRTECMDKCLYHGSGISPPVALFGSGAEIKYLELEKRSLSIDVCHANINAMDDKELLMFLEKNTSGSICAVHKFAGNMKDEDKEKWGRITFMSPDVAKRAAELDGREFCGSSLKIVPSQLGGDKTFSFPAVKAKISWPRRLSKGFGILKCDIMDVNQILRDFYNLAIGGRYVRCDVGIKSMDSVVISGLDKELSEAEILNVLRTATNRRILDFFLVRGNAAENPPCRALEEALLKEIYPSLPKRNPHISSCRAQVFVPEPKDAFMRALISFDGRLHLEAAKALEQIEGMVLPGCLSWQKIKCQQLFHSSLIFPTPVFRVIKEQLDEVLASFRNLKGLECNLDRAVNGSYRVKITANATKTVAEVRRPLEELLRGRTIEHDSLTPAILQLMLSRDGFNLRSSLQQETGTYILFDRLNLNIRVFGSPNKVALAHDKVVQSLLSLHEEKQLEIHLRGRDLPSDLMKQMIKNFGPDLHGLKARVPGVDLSLNIRRHIISLHGRMELKPRVEEIVFEIARSSNHLLETFDNAGPNCPICLCEVEDGYRLEGCGHLFCRLCLVEQCESAIKNQGTFPLCCTHKDCGAHILLADLRSLLFGDKLEDLFRASMGAFVATSGGTYRFCPSPDCPSIYRVADPGTAGDPFVCGACYSETCTRCHLEYHPYLSCERYKELKEDPDSSLLEWCRGKDQVRSCLACGFVIEKVDGCNHVECKCGKHVCWVCLEFFSASDECYSHLRTVHMAII 1736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01969 1736 SMART ultradead3 272 456 IPR014001 -
Spst1g01969 1736 SUPERFAMILY RING/U-box 1526 1585 - -
Spst1g01969 1736 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 389 398 IPR002464 -
Spst1g01969 1736 Gene3D - 261 449 IPR027417 -
Spst1g01969 1736 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 284 447 IPR014001 -
Spst1g01969 1736 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 476 642 IPR001650 -
Spst1g01969 1736 PANTHER ATP-DEPENDENT RNA HELICASE 243 908 - -
Spst1g01969 1736 Pfam IBR domain, a half RING-finger domain 1606 1659 IPR002867 GO:0008270
Spst1g01969 1736 SUPERFAMILY RING/U-box 1681 1729 - -
Spst1g01969 1736 CDD SF2_C_RHA 451 610 - -
Spst1g01969 1736 CDD Rcat_RBR_DEAH12-like 1682 1732 - -
Spst1g01969 1736 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1522 1604 - -
Spst1g01969 1736 Pfam Helicase conserved C-terminal domain 484 601 IPR001650 -
Spst1g01969 1736 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 797 IPR027417 -
Spst1g01969 1736 ProSitePatterns Zinc finger C2H2 type domain signature. 1711 1732 IPR013087 -
Spst1g01969 1736 Pfam Helicase associated domain (HA2) 663 757 IPR007502 GO:0004386
Spst1g01969 1736 ProSiteProfiles Zinc finger RING-type profile. 1527 1569 IPR001841 -
Spst1g01969 1736 SMART ha2_5 662 758 IPR007502 GO:0004386
Spst1g01969 1736 SMART ibrneu5 1660 1724 IPR002867 GO:0008270
Spst1g01969 1736 SMART ibrneu5 1591 1659 IPR002867 GO:0008270
Spst1g01969 1736 FunFam RBR-type E3 ubiquitin transferase 645 751 - -
Spst1g01969 1736 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 624 667 - -
Spst1g01969 1736 Gene3D - 450 621 IPR027417 -
Spst1g01969 1736 CDD BRcat_RBR 1611 1662 - -
Spst1g01969 1736 CDD DEXHc_RHA-like 291 446 - -
Spst1g01969 1736 SUPERFAMILY RING/U-box 1610 1664 - -
Spst1g01969 1736 Gene3D - 1655 1734 - -
Spst1g01969 1736 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 450 621 - -
Spst1g01969 1736 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 826 903 IPR011709 -
Spst1g01969 1736 ProSitePatterns Zinc finger RING-type signature. 1543 1552 IPR017907 -
Spst1g01969 1736 SMART helicmild6 504 602 IPR001650 -
Spst1g01969 1736 Gene3D - 624 667 IPR042035 -
Spst1g01969 1736 Coils Coil 204 224 - -
Spst1g01969 1736 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1655 1733 - -
Spst1g01969 1736 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 257 449 - -
Spst1g01969 1736 ProSiteProfiles TRIAD supradomain profile. 1523 1731 IPR044066 -
Spst1g01969 1736 MobiDBLite consensus disorder prediction 1 30 - -
Spst1g01969 1736 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1523 1602 IPR013083 -
Spst1g01969 1736 Pfam DEAD/DEAH box helicase 286 432 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01969 Spst-Chr1 27834146 27841692 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01969 1539 1714 ARIADNE family AT3G27710 29.609 6.45e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01969 K12818 - gmx:100810008 2962.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01969 1 27834146 27841692 Spst1g01969 1 27834146 27841692 ECH