Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01967 ATGGTTGTGTGTTTCTTTTCCTCTTGTTCACATGTTCTAAATTTTTCCAGGATGAGTTTTCATCCTAGAAAACTATTTTTTCCCTACCTTGGTTCAAGTGATGCTGCTACCATGGGGAGCAGAATCAATGGTGGCCCAAGTCCTTCTCCTCTGCCCTCCCCAGTCTCAATGTCATTTCCGCGGTTTCGACCACCCCTTCTTGATGGAGATGACATGCACCAAAACCTTGCACCTATCATTATAATTGGCATAGGTAGCATAGGTTGTGTAATTATGTTTCTCATCACCTTGTCCAAAATCCTAAAGTACTATTACTTAAGTAGATACAACGTTAGCAGAAGAAATCCTCCAATATTATTTGACATTCGTGGAGATTTTACCTTTTCTGATGATGAGGAGCAGGAACAAGTTATTAGGCAGCACCCCATATGGTTCGTCCCCACCGAGGGTCTCCAAGAATCAACCATAGACTCCATTACAGTTTACAGATACAGAAAAGATGAAGGGTTGGTTAAAGAAATTGAGTGTCTTGTTTGCCTAGGTGAGTTTCAACAAGAAGAGAGTCTGAGACTATTGCCAAAGTGTAGCCATGCTTTCCACGTTCCTTGCATTGATACTTGGTTGAGGTCACATAAAACTTGTCCCTTGTGCCGTGCCTCTATTGCTCATGATGCTGGCAGTGTTGGTGGTGGAACTGAGTCTGATTCAAGTTTTTCTGATATAATCGAGGACATGGACGAATGTAATGGTGGTGGAGTGAGGGTTGGTGATGAAGATTCTAGCGTAGAGGGGAGGATTTATGGAATTGAAGTTTTGTCTGAATGTGGTGAGGTGAGTGGTCATTCTTCAATTCTAATTGGTTCTGCTTCTGATGTTGGTACACAAGCACAAGCATTTGATGAGGAAAATGAATCCAAAATGAAGAGGTCTTTCTCACTGGATTCATCTTCTGCTTCAATGGTATTTCATGATGTGTTAGATATACAAAGCTTAGACACCAACACCAACACCAACTTGGTGGTTGAAAAGAAGGCTTCAATTTCAGGTAACAAAGATGATGATGATGATGTTGGTATCACTAAGGAGTTTAACGACAGTACAACTGAATACAAAGTGGCTTCAATTGAGCATGAATTGCAAGAGAGGCATTTGTCATTGAGGTTCTCTTGA 1170 0.412 MVVCFFSSCSHVLNFSRMSFHPRKLFFPYLGSSDAATMGSRINGGPSPSPLPSPVSMSFPRFRPPLLDGDDMHQNLAPIIIIGIGSIGCVIMFLITLSKILKYYYLSRYNVSRRNPPILFDIRGDFTFSDDEEQEQVIRQHPIWFVPTEGLQESTIDSITVYRYRKDEGLVKEIECLVCLGEFQQEESLRLLPKCSHAFHVPCIDTWLRSHKTCPLCRASIAHDAGSVGGGTESDSSFSDIIEDMDECNGGGVRVGDEDSSVEGRIYGIEVLSECGEVSGHSSILIGSASDVGTQAQAFDEENESKMKRSFSLDSSSASMVFHDVLDIQSLDTNTNTNLVVEKKASISGNKDDDDDVGITKEFNDSTTEYKVASIEHELQERHLSLRFS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01967 389 Pfam Ring finger domain 175 218 IPR001841 -
Spst1g01967 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 226 IPR013083 -
Spst1g01967 389 CDD RING-H2_EL5-like 175 218 - -
Spst1g01967 389 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 74 222 IPR044675 -
Spst1g01967 389 ProSiteProfiles Zinc finger RING-type profile. 176 218 IPR001841 -
Spst1g01967 389 SMART ring_2 176 217 IPR001841 -
Spst1g01967 389 FunFam E3 ubiquitin-protein ligase ATL6 145 224 - -
Spst1g01967 389 SUPERFAMILY RING/U-box 165 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01967 Spst-Chr1 27829842 27831011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01967 67 222 C3H Transcription Factor Family AT1G72220 43.125 3.18e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01967 - - gmx:102667611 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01490 3 18360309 18361520 Spst1g01967 1 27829842 27831011 PCT