Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01964 ATGGAGGTTTCCGTGCAGCATGCGTTGATTCTTGTGGTGTCTCTTTGGCATTCATCAGCATGCGCGAAAGCTCAGTGGAATCCATCAAACCCTGCTACCTACGAGGAGATGAACCGAAAGGAAAACTTGAAGGTCTCACTCAGTCTTTCCTTCTCCTTTGTCTTCATTGGCTTCTTCTTGTTCGTTTTCTTTCAAGTCCGCGCGCGTTTTTTTCCCCACCTTCACTACACCAATCCCCTCCCGAGAAGAATCGCCGAAGCGATCGAAAGGTGCCCCACCTTCGATTTCTCCAAGATGAAGGAGCTGCGAGTGGGGAATGAGGCTGAGGAGTGCGCGGTGTGCTTGGTGGAGTTCCAAGACTCCGACACCGTCAAGATGCTGCCGAGATGCCATCATTTTTTCCACCAGCATTGCATCGATCAATGGTTGCCCTCTTGCATGACGTGTCCCATTTGCCGCCAGAAGCTGATATCCGAGGACACCGAAGTCAACATTGCCGATGTCCCAATGGAAGAAGAAGAAGAAGAAGATGATGATGATGATGCTACCACTGAGTTTACAGAGGTGGCAGTAACAGCAGCAACGGAACAAGCTGAACATGAAAGTGAAGCTGATACTGTTGTGGGACAGGTTTTGGGATGA 642 0.4984 MEVSVQHALILVVSLWHSSACAKAQWNPSNPATYEEMNRKENLKVSLSLSFSFVFIGFFLFVFFQVRARFFPHLHYTNPLPRRIAEAIERCPTFDFSKMKELRVGNEAEECAVCLVEFQDSDTVKMLPRCHHFFHQHCIDQWLPSCMTCPICRQKLISEDTEVNIADVPMEEEEEEDDDDDATTEFTEVAVTAATEQAEHESEADTVVGQVLG 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01964 213 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Spst1g01964 213 Pfam Ring finger domain 110 153 IPR001841 -
Spst1g01964 213 FunFam E3 ubiquitin-protein ligase ATL6 75 159 - -
Spst1g01964 213 SUPERFAMILY RING/U-box 110 158 - -
Spst1g01964 213 MobiDBLite consensus disorder prediction 194 213 - -
Spst1g01964 213 PANTHER RING-H2 FINGER PROTEIN ATL16 86 183 IPR044600 GO:0016567|GO:0016740
Spst1g01964 213 SMART ring_2 111 152 IPR001841 -
Spst1g01964 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 163 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01964 Spst-Chr1 27809863 27810504 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01964 85 212 Rapid Response to Elicitors AT2G35000 37.500 1.04e-22 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01964 K10664 - gmx:100804862 176.792