Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01956 ATGGGTCTCTCAAATTTTCCAACTGCATCTGAAGGAGTGCTTCCTGTGCTCGTGATAAACACGGTTCTCTCAGTGGCTGTGTTGAAGAACATGTTTAGATCCATGCTCCAAGTTGTTGGGGGCAGTTCAAGTTCAGGTTCAAGCACATCCTCTTTCTCTCCGAACGTTGAACATGAGTCCCATGAAAGCGCACGAGAAAGGAGGGTGTCGATAACTGAGTACAAGGCATTGTCAGGAAGGAGAAGTAGTGAGAGTGGATGGAGGGGTGTGGCCATGGTGGAGTGCTGCGTTTGTCTGTGTCGTTTTGAAGGCAATCAAGAGGTAAGCGAGTTGCCTTGCAAACATTACTTCCACAGAGGTTGCTTAGACAAATGGTTTGATAACAAACACGCCACATGCCCCTTGTGTCGTTCCATGGACTAG 423 0.4799 MGLSNFPTASEGVLPVLVINTVLSVAVLKNMFRSMLQVVGGSSSSGSSTSSFSPNVEHESHESARERRVSITEYKALSGRRSSESGWRGVAMVECCVCLCRFEGNQEVSELPCKHYFHRGCLDKWFDNKHATCPLCRSMD 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01956 140 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Spst1g01956 140 PANTHER - 1 139 IPR044249 -
Spst1g01956 140 CDD RING-H2_PA-TM-RING 94 137 - -
Spst1g01956 140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 140 IPR013083 -
Spst1g01956 140 SMART ringv_2 94 137 IPR011016 GO:0008270
Spst1g01956 140 SMART ring_2 95 136 IPR001841 -
Spst1g01956 140 MobiDBLite consensus disorder prediction 42 57 - -
Spst1g01956 140 SUPERFAMILY RING/U-box 94 138 - -
Spst1g01956 140 MobiDBLite consensus disorder prediction 42 67 - -
Spst1g01956 140 Pfam Ring finger domain 94 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01956 Spst-Chr1 27745418 27745840 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01956 1 138 C3H Transcription Factor Family AT2G04240 35.294 3.22e-23 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01956 K16285 - gmx:100811790 192.971