Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01949 ATGTTAGGGGAAGAGGGAAAGGACAAAGCCACCGCCGGTAGCGGTGTTGCATGGAAAATTTATTCTCGTTCGGTTTCATGGACTGATAGGTCTCCAAATAGCCGAAAGCCACCGACAAATAGCAAACCAAGACCACTATTGCCACCCCTTCAGCCTCTTTCAATCAACAAGCGCAGCGTTGAGGAATGGCCTAGTGCTGGATCTGATGATCTTGGAGTTTGGCCACTTCCTCAGACTCCAAGAGGCTCCGTAAGAACCTACGATTCAAGTCAACCCACCAAGGATTTTCTTTTCAAGAGGGACAAATTGGCCTTCTTTGACAAGGAGTGTTCCAGAATTGCTGAGCACATATACTTGGGGAGTGACACAGTGGCCAAGAACCATGAACTCCTCAGGCAGAATGGAATCACTCATGTGCTCAATTGTGTTGGGTTTGTTTGTCCTGAATATTTCAAAGGTGACTTTGTCTACAAGACACTTTGGTTGCAGGATAGTCCCACGGAGGACATCACAAGTATTCTCTATGATGTGTTTGATTACTTTGAGGACGTTCGAGAGCAAGGTGGGCGTGTCCTTGTTCATTGCTGTCAGGGGGTTTCTCGATCAACGACTTTGGTAATTGCATATATTATGTGGAGGGAGGGGCAGAGCTTTGAAGATGCTTTTCAGTTTGTGAAGACCGCAAGGGCAGTGACCAACCCAAACATGGGTTTTGCCTGTCAACTTTTGCAGTGCCAGAAACGGGTCCATGCTATGCCTGCAAGTCCAAATTCTATTCTCAGGATGTACCGTATGGCTCCTCACTCCCCCTATGACCCTCTTCATCTGGTCCCCAAGATGGTAAACCAGCCAGGTGCTCGAGCACTTGATTCTCGTGGGGCCTTCATCATTCATATTCCTTCTGCTATATATGTTTGGAATGGAAAACATTGTAACTCAGTGATGTCATGCAATGCAAGGAGTGCAGCCTTCCAGGTGATCCGCTATGAGAAGGCAAAGGGTCCAATTCTGAGCATCCATGAAGATGAAGAACCACCTGGGTTTTGGATTGCTCTTTCTGATGAGCAACGCTTATCAGGTGATTCTGAGCAACGCTTATTAGGTGATTCTGACAAAGGAGAGGTCATGGAGGATGAACCAATGTTGCCCTCTGAAGGCATGGAGAGTGCTGACCCCAATGATTTGGGTAATGGTCCAAGAAAAGTCGATGCATATGATTTGGATTTTGAGCTTTTTCACAAGGCACTTGCGGGTGGGGTTGTTCCACCTTTTTCTTTGTCTGATCCGGGATCAGAAACTCGTCTTCCTGCTAGAGAACATGGTTGGGCAAGACTTAGGCGGCAGTTTGCTAGTGGATTACTCACATCCCCCAGATTGAATAGTGAAGCTGATTCAACCCCATGCAATGATCAATCCAGTGTAATGGTGGAAGCTGAAAAACAAGATGCTGCAGAAGAGCCTTTGTCACCATCATCTATTCATCCCTGTGGCTCACCAGATTCCTTTGAATGCTATCCAAATGACAGCTTAGGTAGGGAAAGAGGTAGTCATGAAGCAATGGCGATCTCTGTTCATGGTGTTGCTTCATCATTGCCATTGTCTCCTCCTGGCACATCAAATCCTTTTCCTTGTTTTATAAGCTGCAGCCCAAAATTCAATTCCAAGTCTCCAACACTTTCACCTTCAAGTTCCGATTACGCCAGCTCATTTACTTTTTCACCTTCCTCTACCAACTGGTCAGACTTATCCTTTGTGTCTTCTCGGCAGCCATCACCATCTGGCCTTGAATCAGCTGAACCCCTTTTTGTTAAAGATGCATCTTTCTCAGAAGGTTCCTCTTTACTTCACAAAGAAGCTGTCTCATCACCCTCAGAGGCAGTTTCAGCTAATTACACATTCGAAGGGGCAAACTCTAATTTGCCCTTGAAAGGTTCTTCCCTTTCTATTGCAGAGCGCAGAGGGAGTCATCCACCACCTCTGATGTTGCTATCCTCAGCCACCGAATCCTCTCACATCCCCAAGAACCTGGTAAGATCACTGTCCTTCTCTTTGCCTGACTTAGATTATAATGTGGTGAAGGATGATAGTTGCAAACAATTTGACCGTGAAAACAAGGGAACATGGCTAATTTCAGAAGACAACATCATTAGTTCATGTGTTGGACCCAAGAGTGAAATTAGTGACAACGAGGATCATGGTACAGAGTTATGTAATATGATGGCTGAGCTTGAGATACAGGAGAAAGAAAATGGGATTGATTTTCCCCGTCCCTGCTTATTTGGACCACCAGTCCAGAATGAAGGCATTGATATTTTGGATGAAGGGGGAGGTCAGGAACTTGAGGACTGCAACTAA 2355 0.4573 MLGEEGKDKATAGSGVAWKIYSRSVSWTDRSPNSRKPPTNSKPRPLLPPLQPLSINKRSVEEWPSAGSDDLGVWPLPQTPRGSVRTYDSSQPTKDFLFKRDKLAFFDKECSRIAEHIYLGSDTVAKNHELLRQNGITHVLNCVGFVCPEYFKGDFVYKTLWLQDSPTEDITSILYDVFDYFEDVREQGGRVLVHCCQGVSRSTTLVIAYIMWREGQSFEDAFQFVKTARAVTNPNMGFACQLLQCQKRVHAMPASPNSILRMYRMAPHSPYDPLHLVPKMVNQPGARALDSRGAFIIHIPSAIYVWNGKHCNSVMSCNARSAAFQVIRYEKAKGPILSIHEDEEPPGFWIALSDEQRLSGDSEQRLLGDSDKGEVMEDEPMLPSEGMESADPNDLGNGPRKVDAYDLDFELFHKALAGGVVPPFSLSDPGSETRLPAREHGWARLRRQFASGLLTSPRLNSEADSTPCNDQSSVMVEAEKQDAAEEPLSPSSIHPCGSPDSFECYPNDSLGRERGSHEAMAISVHGVASSLPLSPPGTSNPFPCFISCSPKFNSKSPTLSPSSSDYASSFTFSPSSTNWSDLSFVSSRQPSPSGLESAEPLFVKDASFSEGSSLLHKEAVSSPSEAVSANYTFEGANSNLPLKGSSLSIAERRGSHPPPLMLLSSATESSHIPKNLVRSLSFSLPDLDYNVVKDDSCKQFDRENKGTWLISEDNIISSCVGPKSEISDNEDHGTELCNMMAELEIQEKENGIDFPRPCLFGPPVQNEGIDILDEGGGQELEDCN 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01949 784 ProSiteProfiles Dual specificity protein phosphatase domain profile. 109 251 IPR020422 GO:0006470|GO:0008138
Spst1g01949 784 PANTHER MKPA PROTEIN 27 721 - -
Spst1g01949 784 SUPERFAMILY Actin depolymerizing proteins 255 354 - -
Spst1g01949 784 MobiDBLite consensus disorder prediction 360 394 - -
Spst1g01949 784 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 102 251 IPR029021 -
Spst1g01949 784 MobiDBLite consensus disorder prediction 360 379 - -
Spst1g01949 784 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 168 229 IPR000387 GO:0016311|GO:0016791
Spst1g01949 784 MobiDBLite consensus disorder prediction 27 54 - -
Spst1g01949 784 ProSitePatterns Tyrosine specific protein phosphatases active site. 193 203 IPR016130 GO:0016311|GO:0016791
Spst1g01949 784 Pfam Dual specificity phosphatase, catalytic domain 117 247 IPR000340 GO:0008138|GO:0016311
Spst1g01949 784 Gene3D Severin 261 359 IPR029006 -
Spst1g01949 784 Gene3D Protein tyrosine phosphatase superfamily 88 251 IPR029021 -
Spst1g01949 784 SMART dsp_5 109 248 IPR020422 GO:0006470|GO:0008138
Spst1g01949 784 CDD DSP 110 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01949 Spst-Chr1 27678721 27681558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01949 1 145 Protein tyrosine phosphatase (PTP) family AT3G55270 43.085 4.03e-32 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01949 - - gmx:100775448 1103.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01505 3 18506826 18508511 Spst1g01949 1 27678721 27681558 PCT