Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01944 ATGGGAGAAACCGGAATCATTGTCCGGTTCCAGGGAAGCTTAGACCCAAGAGCTGAAGAGTTCAGACCAACCATCACCAACCCCATTATTCATTGCCAATGGTACCCTCTTCCTCTTCCTCTACCCATGCCATTACCCTTGCCCTTACCGCACCCTCTTCCTCTTCCTCCTCCTCCCCCTCCTCACCTCTCCACCTCCTCCACCCGCTCCCTTCTCCTCACGCCGCTTCCCCTCACCTCTGACTCCGCCCTCCGGGCTGAACTCCAGGCCTTCGGCGAAGTCAGAGCCCTCCAAACTGAAGCCCTCCGCCATGGAATCCTCACTGTCCACTTCTACGACCTCCGCCATGCAGAGTCCGCCTTCGCTGCCATCCGCTCCATGCACCACCACTTCCCTCAATTCCCTCCAGCTGCTGCCGCTGCCCCCGGTCTCCTCTCCGCTCGCCCTATCTCCGCTCACTACGTCCTCCCCTCTTCCTCCTCCACCGCCCTTCCCGATGCCCACAACCAAGGCACCCTCGTCGTCTTCAACTTAGACCCTCACCTCTCCACCGACCACCTCCGTCGACTCTTCCAACCTTTCGGTCCCATTAAGGAATTGAGAGATACCCCATGGAAAAAGAACCAAAGATTCGTGGAGTTCTTCGACACCAGAGACGCTGCCAAGGCCTTGAAACACATGAACGGCAAGCAAATTCACGGCAAACCCATAATCATTGAGTTCAGTAGACCCGGTGGTCACACTCGCAAGTTCTTCCACCACCCTCCTTCATCCAAAACCATGACTCTCGATTTTAATGCCCCACCACCCTTCCCAGCTTCCCCGCCACGTCGTTTTGCTGCTGCTCCTCGCTCGCATAGCTCTCAGCCTCAATTGTCTCACAAGAAATCATTGGGAAGCCCCGACAAGAATGAAGGATCTGTGGATGAGGCAATTGGATCAATGAATTTGACCGGGGAAGTTGGCAATGGGGTTGAAGAGCAGCAGCATTCACATGGTGGTGGCCCCCCAAGGAGGAATCTTAGCAGAAAGCAGAATTGCGAGAGCACGCCAGTAGTAGCAACCACAAAACAACACCAACAACCACAGCAACTACCTAGAAGTAGGCACTGGAAGGGAAAGCAAGCGAAGAAACACGAAGCTCGCTTTCTAATCAAAGAGGATGCCATTGTTGAGTCTGTTACCAAAGATACTCGAACTACTGTCATGATCAAAAACATTCCCAACAAGTACAGTCAGAAGTTGCTATTAAACATGCTGGATAACCACTGCATACACTGCAACGAGCAGATTGCAGACGGCGATGAGCAGCCTCTATCCTCCTACGACTTCGTGTACCTCCCCATTGATTTCAACAACAAGTGCAACGTGGGATACGGGTTCGTGAACATGACATCCCCGGAGGCAACACTGAGGCTCTACAAGGCCTTCCACCTTCAACATTGGGAGGTTTTTAATTCAAGAAAAATCTGTGAAGTCACCTATGCTAGAGTTCAGGGTTTGGAGGCATTGAAGGAGCACTTTAAGAACTCAAAGTTCCCATGCGAGATGGAGCATTACCTGCCAGTGGTGTTTTCACCACCTCGAGATGGGAGGGAACTGACGGAGCCACTTCCACTAGTGGGGAACAACACCAACAGGCAGCATCAACCACCTAATTCAATTCCAAGCTGCAATGAGAATGGCGGTGATGACGTGGCAAGCTGCAAAAGCGGCGGCGTAGGTGATGATGATGATTACACAACTGGAGAAGTGGGTGGTGGAGGAGGCCTAGATAATTCTCAAGGGTAG 1791 0.5254 MGETGIIVRFQGSLDPRAEEFRPTITNPIIHCQWYPLPLPLPMPLPLPLPHPLPLPPPPPPHLSTSSTRSLLLTPLPLTSDSALRAELQAFGEVRALQTEALRHGILTVHFYDLRHAESAFAAIRSMHHHFPQFPPAAAAAPGLLSARPISAHYVLPSSSSTALPDAHNQGTLVVFNLDPHLSTDHLRRLFQPFGPIKELRDTPWKKNQRFVEFFDTRDAAKALKHMNGKQIHGKPIIIEFSRPGGHTRKFFHHPPSSKTMTLDFNAPPPFPASPPRRFAAAPRSHSSQPQLSHKKSLGSPDKNEGSVDEAIGSMNLTGEVGNGVEEQQHSHGGGPPRRNLSRKQNCESTPVVATTKQHQQPQQLPRSRHWKGKQAKKHEARFLIKEDAIVESVTKDTRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIADGDEQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMEHYLPVVFSPPRDGRELTEPLPLVGNNTNRQHQPPNSIPSCNENGGDDVASCKSGGVGDDDDYTTGEVGGGGGLDNSQG 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01944 596 MobiDBLite consensus disorder prediction 324 378 - -
Spst1g01944 596 SUPERFAMILY RNA-binding domain, RBD 172 478 IPR035979 GO:0003676
Spst1g01944 596 SMART rrm1_1 172 240 IPR000504 GO:0003723
Spst1g01944 596 MobiDBLite consensus disorder prediction 245 310 - -
Spst1g01944 596 FunFam Terminal EAR1-like 1 348 505 - -
Spst1g01944 596 Gene3D - 165 250 IPR012677 -
Spst1g01944 596 PANTHER RNA RECOGNITION MOTIF-CONTAINING 396 527 - -
Spst1g01944 596 MobiDBLite consensus disorder prediction 539 561 - -
Spst1g01944 596 Pfam RNA recognition motif 2 399 509 IPR007201 -
Spst1g01944 596 Gene3D - 342 504 IPR012677 -
Spst1g01944 596 MobiDBLite consensus disorder prediction 532 596 - -
Spst1g01944 596 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 237 IPR000504 GO:0003723
Spst1g01944 596 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 244 IPR000504 GO:0003723
Spst1g01944 596 CDD RRM3_EAR1_like 399 500 IPR034458 -
Spst1g01944 596 MobiDBLite consensus disorder prediction 342 368 - -
Spst1g01944 596 FunFam Protein MEI2-like 1 170 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01944 Spst-Chr1 27640759 27643417 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01944 173 243 Eukaryotic Initiation Factors Gene Family AT2G23350 37.333 2.01e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01944 - - vum:124847631 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01944 1 27640759 27643417 Spst1g01944 1 27640759 27643417 ECH