Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01939 ATGAATGTTCAACCAGAATCCTCAAGAACATTTAATGAATGTGAGAAAGATGAAGTTGAAGACATTATGGCATTTTCATTCACATTTATGTTCCAGTTTTTGGTTCTTGCCCCATCTGTGATTTGTGCATTTCCGGTTCAAGATCCTGAATTAGTGGTCCAGGAAGTGCAAAAGTATGTTATACAATACTTTCAGGAGACTGAAAATGGAGCATGTTGTTTTGAGTGTAGGAGCATCAATGGCTCAAGGAGAAACTTGGGATATCTTTCTTGTGGGACGGGGAACCCTATTGATGATTGTTGGAGATGCGACCCCAATTGGGGAAGGAACCGCAAGCGTCTAGCTAGTTGTGGTATTGGTTTCGGCAAGCATGCCATTGGTGGAAAAGATGGCAAACAATATTTGGTCACTGACCCGAGTGATAACCCTATGAACCCTAAGCCAGGTACATTGAGACATGCTGTTATCCAACAAGAGCCTTTGTGGATCATTTTCAAGCATGACATGGTGATCCAGCTACACATGGATCTCCTTGTTAATTCTTACAAAACTATTGATGGAAGAGGAGCAACTGTCCACATTGCTGGAGGGCCCTGCGTTAAAGTGCACAAGAAGAGGAATATCATAATTCACGGCATACACATTCATGATTGCAAACGAGGTGGCAGTGCATACGTGAGTGATTCTCCCAACCATCGTAGTTGGAGTGCTAGATCGGACGGTGATGGGATCACAATCTTTGGTGGGAGTCATATTTGGGTGGACCATTGCTCCTTGTCGAACTGTTTTGATGGCCTGATTGACGTTGTTCATGGTTCAACGGCCATCACCATTTCCAACAATTACATGACACACCATAACAAAGTCATGCTCTTGGGCCACAGTGATGCATATAAACATGACAAGAATATGCAAGTCACCATAGCCTTCAACCATTTTGGAGAGGGGCTTGGAGGAAGAATGCCCAGATGCAGGTTTGGATACTTTCATGTGGTGAACAACGATTACACACATTGGCAACATTATGCAATAGGTGGGAGTTCATCCCCAACCATTTTCAGCCAAGGCAATAGATTTCTTGCTCCAAATGACCAAGAGCATAAAGAGGTGACCAAACATTTTAAATCATCAGAAAGAGAATGGAGGAAATGGAATTGGAGATCTGAAGGAGATATAATGTTGAATGGCGCCTTCTTCACAGCGTCCGGGGCAGGAGCAACAGCTACATATGATAAAGCATCAAGCATGGCAGCAAGACCACCTACGCTTCTGCCTTCAATCATAGCCGGGGCTGGACCGCTTAGATGCAAAAATGACCAACTATGCAGCTAG 1332 0.4392 MNVQPESSRTFNECEKDEVEDIMAFSFTFMFQFLVLAPSVICAFPVQDPELVVQEVQKYVIQYFQETENGACCFECRSINGSRRNLGYLSCGTGNPIDDCWRCDPNWGRNRKRLASCGIGFGKHAIGGKDGKQYLVTDPSDNPMNPKPGTLRHAVIQQEPLWIIFKHDMVIQLHMDLLVNSYKTIDGRGATVHIAGGPCVKVHKKRNIIIHGIHIHDCKRGGSAYVSDSPNHRSWSARSDGDGITIFGGSHIWVDHCSLSNCFDGLIDVVHGSTAITISNNYMTHHNKVMLLGHSDAYKHDKNMQVTIAFNHFGEGLGGRMPRCRFGYFHVVNNDYTHWQHYAIGGSSSPTIFSQGNRFLAPNDQEHKEVTKHFKSSEREWRKWNWRSEGDIMLNGAFFTASGAGATATYDKASSMAARPPTLLPSIIAGAGPLRCKNDQLCS 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01939 443 FunFam Pectate lyase 94 435 - -
Spst1g01939 443 SUPERFAMILY Pectin lyase-like 80 436 IPR011050 -
Spst1g01939 443 PRINTS Pollen allergen Amb family signature 342 361 IPR018082 -
Spst1g01939 443 PRINTS Pollen allergen Amb family signature 140 165 IPR018082 -
Spst1g01939 443 PRINTS Pollen allergen Amb family signature 384 408 IPR018082 -
Spst1g01939 443 PRINTS Pollen allergen Amb family signature 176 192 IPR018082 -
Spst1g01939 443 PRINTS Pollen allergen Amb family signature 413 436 IPR018082 -
Spst1g01939 443 PRINTS Pollen allergen Amb family signature 240 261 IPR018082 -
Spst1g01939 443 PRINTS Pollen allergen Amb family signature 320 339 IPR018082 -
Spst1g01939 443 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Spst1g01939 443 Pfam Pectate lyase 179 359 IPR002022 -
Spst1g01939 443 PANTHER PECTATE LYASE 18-RELATED 66 439 IPR045032 GO:0030570
Spst1g01939 443 SMART amb_all 168 365 IPR002022 -
Spst1g01939 443 Gene3D - 94 435 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01939 Spst-Chr1 27608620 27612787 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01939 7 442 Polysaccharide Lyase AT5G63180 61.959 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01939 K01728 - gmx:100801136 756.903