Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01938 ATGAAGGAGGAAATTGAACAGGATAATTGGTGTGAACTGACACCTATTTCAACGGCCATAGTGACTTCAGATGCAGATGAAAGTGATATTGAGATGAATGTCACTGAAGTGGGGTCTGAATGCTATCAAGCAGTTATGGAAATTCCAATTCCACTGTCATTTATGTTACTCTTTCTACTGATTGTACCTTCATGCATTTGTTTTTCCCCACTTCAAGATCCTGAACTAGTGGTTGAAGATGTACAAAAGAGCATTAATGCCTCAAGGAGGAACTTGGCATTTCTCTCTTGTGGGACGGGGAACCCCATTGATGATTGTTGGAGGTGTGATGCCAATTGGGAAAAGAATCGCAAGCATTTAGCAGATTGTTCCATTGGGTTTGGTAAGCAGGCAATTGGAGGGAGGGATGGTAAGATATATGTGGTGACTGACCCTGGTGATCACCCTGTGAATCCCAAGCCAGGAACACTTAGATATGGTGTGATCCAAGAGGAACCACTGTGGATCATTTTCCAGCGTGACATGGTGATCAGGCTGAAGGAAGAGCTTATGATGAACTCTTTCAAGACAATTGATGGCAGAGGGGTAAGTGTGCACATTGCTGGTGGCCCTTGCATTACTATACAGTATGTGACCAACATTATCATTCATGGGATTAACATCCATGACTGCAAACAAGGAGGGAATGCCTATGTGAGGGACTCCCCTTCACACTATGGATGGAGGACTCTCTCAGATGGTGATGGCATCTCCATCTTTGGAGGGAGTCATGTTTGGGTGGATCACTGCTCTCTCTCCAATTGCCGTGATGGCCTAATTGATGCTATCCATGGATCCACTGCCATTACCATATCCAACAATTACATGACCCACCATAACAAGGTCATGCTTTTGGGCCACAGTGATACTTTCACTAGGGACAAGATCATGCAAGTCACCATTGCTTTTAACCACTTTGGAGAAGGGCTAGTACAGAGAATGCCAAGATGTAGGTATGGATACTTCCATGTGGTGAACAATGATTACACCCAATGGAAAATGTATGCCATAGGGGGGAGTGCTGCCCCAACTATCAATAGCCAAGGGAATAGATTTCTTGCTCCTAATGACAATACCTTCAAAGAGGTGACAAAGAGGGAGAATTCAGCACAGAGCAAATGGAAGAACTGGAATTGGAGGTCAACGGGAGATTTGATGTTAAACGGTGCATTTTTCACTGCATCAGGAGCAGGTGCATCTTCAAGCTATGCAAGAGCATCTAGTTTGTCAGCAAAACCATCTTCGCTTGTCAGTTCTATAACGGCATCAGCTGGATCACTTCGATGCAGAAAGGGTTCACGTTGCTGA 1347 0.4447 MKEEIEQDNWCELTPISTAIVTSDADESDIEMNVTEVGSECYQAVMEIPIPLSFMLLFLLIVPSCICFSPLQDPELVVEDVQKSINASRRNLAFLSCGTGNPIDDCWRCDANWEKNRKHLADCSIGFGKQAIGGRDGKIYVVTDPGDHPVNPKPGTLRYGVIQEEPLWIIFQRDMVIRLKEELMMNSFKTIDGRGVSVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNAYVRDSPSHYGWRTLSDGDGISIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTRDKIMQVTIAFNHFGEGLVQRMPRCRYGYFHVVNNDYTQWKMYAIGGSAAPTINSQGNRFLAPNDNTFKEVTKRENSAQSKWKNWNWRSTGDLMLNGAFFTASGAGASSSYARASSLSAKPSSLVSSITASAGSLRCRKGSRC 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01938 448 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Spst1g01938 448 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Spst1g01938 448 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Spst1g01938 448 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Spst1g01938 448 PRINTS Pollen allergen Amb family signature 390 414 IPR018082 -
Spst1g01938 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Spst1g01938 448 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Spst1g01938 448 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Spst1g01938 448 SMART amb_all 174 371 IPR002022 -
Spst1g01938 448 PANTHER PECTATE LYASE 18-RELATED 73 446 IPR045032 GO:0030570
Spst1g01938 448 FunFam Pectate lyase 100 441 - -
Spst1g01938 448 SUPERFAMILY Pectin lyase-like 85 442 IPR011050 -
Spst1g01938 448 Gene3D - 100 441 IPR012334 -
Spst1g01938 448 Pfam Pectate lyase 185 365 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01938 Spst-Chr1 27605302 27608361 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01938 53 448 Polysaccharide Lyase AT5G63180 76.413 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01938 K01728 - gmx:100782388 760.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01938 1 27605302 27608361 Spst1g01938 1 27605302 27608361 ECH
Spst1g01938 1 27605302 27608361 Spst9g02065 9 41745464 41748204 ECH