Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01933 ATGGAGGGGTTGGAGTGGTTCCTTGTGGCAACAAGCAGCATAGGCTTCATTTGTGTGTGCAAGGCACTTGTGAAATTTCTCAAGTGGGTGTGGGCGATGTTCTTGAGGCCACCAAAGAACCTCAAAGAATATGGTTCATGGGCTATAATCACTGGCTCCACTGATGGAATTGGCAAGGCCATGGCCTTTGAATTGGCATCCAAGGGACTCAACCTTCTCTTGGTAGGTCGAAACCCTCTAAAACTTGAGGCAACCTTGAAGGAAATAAGAGAGAGACATGGTGTTGAGGTCAAGTTTGTGGTGATAGACATGCAAAAGGTTGGTGGAGAGGAAATAGCAAAGAGAATAGAGGAAGCAATAGATGGTTTAGATGTTGGTTTGCTTGTTAATGGTGCTGGCTTGGCTTACCCTTATGCAAGATTCTTTCATGAGGTTGATTTGGAGCTTATGGATGCCATTGTCAAAGTGAATGTGGAGGCAACAACTTGGATCACAAAGGCTGTGATTCCATCCATGATCAAGAAGAAAAAAGGTGCTATACTGAACATTGGTTCTGGTTCCACTGTGGTCCTTCCTTCATATCCTCTAGTCACTCTCTATGCTGCTACAAAAGGATACCTTGCAATGTTCTCTAGATGCATCAGTTTGGAATATAAGCATCAAGGAATTGATATCCAATGTCAGGTTCCATTATTTGTGTCAACAAAGATGACCAAAATGAAGAGTTCAGTTTTTGTGCCAACACCAGAATTGTACAGCAAAACATGCACAAGGTGGATTGGCTATGAAAAACTGGTTGTGCCATACTTTCTCCATTCTCTGCAAGCCTTTCTCATAAAGGCAATTCCTCATGCATTTCTGGATTCCTACATGTTCAGTTATTTTCTTTATTTTCGTGCAAGAGGAATCTCCAAGGACTCCAAAAACAAAACATTATTAGCTGCATCTAATTCTGCAGAACCAAACATCATTAATCAAGATTATAGTACAAAATATATGTAA 1002 0.4112 MEGLEWFLVATSSIGFICVCKALVKFLKWVWAMFLRPPKNLKEYGSWAIITGSTDGIGKAMAFELASKGLNLLLVGRNPLKLEATLKEIRERHGVEVKFVVIDMQKVGGEEIAKRIEEAIDGLDVGLLVNGAGLAYPYARFFHEVDLELMDAIVKVNVEATTWITKAVIPSMIKKKKGAILNIGSGSTVVLPSYPLVTLYAATKGYLAMFSRCISLEYKHQGIDIQCQVPLFVSTKMTKMKSSVFVPTPELYSKTCTRWIGYEKLVVPYFLHSLQAFLIKAIPHAFLDSYMFSYFLYFRARGISKDSKNKTLLAASNSAEPNIINQDYSTKYM 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01933 333 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 187 215 IPR020904 GO:0016491
Spst1g01933 333 Gene3D - 41 266 - -
Spst1g01933 333 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 304 IPR036291 -
Spst1g01933 333 PIRSF 11-beta-HSD1 1 305 - -
Spst1g01933 333 FunFam Hydroxysteroid (17-beta) dehydrogenase 3 41 267 - -
Spst1g01933 333 CDD 17beta-HSD1_like_SDR_c 45 283 - -
Spst1g01933 333 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 123 134 IPR002347 -
Spst1g01933 333 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 200 219 IPR002347 -
Spst1g01933 333 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 178 186 IPR002347 -
Spst1g01933 333 PANTHER RH59310P 7 309 - -
Spst1g01933 333 Pfam short chain dehydrogenase 47 241 IPR002347 -
Spst1g01933 333 PRINTS Glucose/ribitol dehydrogenase family signature 200 219 IPR002347 -
Spst1g01933 333 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Spst1g01933 333 PRINTS Glucose/ribitol dehydrogenase family signature 47 64 IPR002347 -
Spst1g01933 333 PRINTS Glucose/ribitol dehydrogenase family signature 123 134 IPR002347 -
Spst1g01933 333 PRINTS Glucose/ribitol dehydrogenase family signature 172 188 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01933 Spst-Chr1 27576575 27578088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01933 14 310 Lipid Metabolism Gene Families AT1G67730 48.829 1.75e-106 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01933 K10251 - gmx:100816067 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01933 1 27576575 27578088 Spst1g01933 1 27576575 27578088 ECH
Spst3g01573 3 19066521 19069199 Spst1g01933 1 27576575 27578088 PCT