Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01928 ATGTGGCAAAATCAGCCGAGTCATTCTTCTTACAGTGATTCTGTCGAAGCTCTTGAAAATGATATACAGCATGCTAATACCTTGGCATCGGCACTTCCAAGAGATTATGATGGGAACTATTTTCAGATGAAATTATCTTACAGCCCCTTTGCACCTCTTTTCTTGTACTTGATTAAATGGTTGGATTTTAGTTGTACAGATACTTTACCTGTGTATTTGGGCTTACTCCACATACTCATTTTCAATGTATATGCTGATGGAATACCATCTATTTCCTCAAATGAAAGGAAAGCAACTATAAAGGAATTTTATGCTGTTATATACCCTTCATTAAGGTTACTTCAAGGCGAGTTTAACAATGATCGAAGAAACAGTTATGCAGAAGAAAGCAGAAAGAGGCTTGAAAAGGTTCTCAATGAAGATTTAGAGAGAGATGAAGAATGTGGCATATGCATGGAAAACAACATGAACATGGTTCTACCTAATTGTGGACATTCCCTCTGCATTAGCTGCTTCCATGATTGGTATATGAGATCAGAGTCATGCCCATTTTGCCGTGGAAGCCTGAGGATGATCACTCCGACAGATTTATGGGTGGTCATTGGCAACAGTGATGTGGTTGACAGGATCACCATTGCAAAGGACAATTTAAGACGTTTCTACCTTTTCATTCAGACTCTGCCTCCAATCTTACCAGAACCACATCTATTTTATACCTTCAATTACATGCTATAA 735 0.3837 MWQNQPSHSSYSDSVEALENDIQHANTLASALPRDYDGNYFQMKLSYSPFAPLFLYLIKWLDFSCTDTLPVYLGLLHILIFNVYADGIPSISSNERKATIKEFYAVIYPSLRLLQGEFNNDRRNSYAEESRKRLEKVLNEDLERDEECGICMENNMNMVLPNCGHSLCISCFHDWYMRSESCPFCRGSLRMITPTDLWVVIGNSDVVDRITIAKDNLRRFYLFIQTLPPILPEPHLFYTFNYML 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01928 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 195 IPR013083 -
Spst1g01928 244 SUPERFAMILY RING/U-box 137 193 - -
Spst1g01928 244 Pfam Zinc finger, C3HC4 type (RING finger) 145 189 - -
Spst1g01928 244 SMART ring_2 148 185 IPR001841 -
Spst1g01928 244 ProSiteProfiles Zinc finger RING-type profile. 148 186 IPR001841 -
Spst1g01928 244 PANTHER RING FINGER PROTEIN 41, 151 9 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01928 Spst-Chr1 27537689 27539703 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01928 148 197 C3H Transcription Factor Family AT5G01960 36.000 6.14e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01928 - - gmx:100805014 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01928 1 27537689 27539703 Spst1g01928 1 27537689 27539703 ECH
Spst1g01928 1 27537689 27539703 Spst3g00106 3 1929505 1938005 PCT