Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01921 ATGGAGGATTTTCTGTCTGCAATTTGCCCCAATTCTCCATTCGTACGCATCTTGCATAAGAACATTATTGGACTTTTGAGGTTTGGGATGGAGAGAAGTTTTGCAGTCAACATAGTGACTGTTGTTATGATTGTTGTGCTTGGATTTAATCAGAAGATTGATCGTGGAGTTCGAAGATCAGATGACCAGGTACTAGCTGATCTTGGAGATCCACTTCTTTCGAATGACATGGAACTTGAGGAAGGTGGCTACCATAACCTTGAACATAGTGGAAACTTTTGGGATTTGATGACTTTCAAATTCATAACTCCAGTAATGAATCATGGTGTGGTAAAGCAATTAGACTCTGATGACCTATTACCACTACCTACTGATATGGGTCCTTCATCCTGTCATGATGTGATTTTATCCTGCTGGCAATCTCAACTGAGTAACAATGGTTCAAACCCATCTTTGTTTAGAGCACTCTGTAGTGCATATGGATGGCCATATCTCCGCCTGGGTTTATTGAAGGTGATTAATGATTGCATTGGTTTTGCGGGACCATTGCTTCTCAATAAGCTGATCAAGTTTCTTCAACAAGCCGAGCGTTCAAAATTCACAAATGGAGAAATTCAGACATTTATGTCAGTGGATGCTGACCGAACTGTCAACTTGTGTAACAGTTTCCATGATATGTGGAGCCTGCCTCTACAAATTGGAGTGGCGCTCTATCTTTTGTACGCTCAAGTCAAATTTGCATTTGTATCTGGATTAGCAATAACCATTTTATTGATACCAGTGAATAAATGGATATCTCAATTGATTGCAAGTGCTACTGAGCAAATGATGAAGGAGAAGGATGAAAGGATTCGTAGGACAGGAGAACTTTTGACTAATATTCGCACTTTGAAGATGTATGGATGGGAATTTCTTTTTTCTAGTTGGTTGATGGATACAAGAACCCTGGAAGTCAAACACTTAGCTACTCGGAAGTACTTGGATGCATGGTGTGTTTTCTTTTGGGCTACAACACCAACGCTCTTTTCTCTTTTCACATTTGGACTCTTTGTACTTATGGGACATCAACTTGATGCTGCAATGGCCATTATATCCTCCAAACGGTTGAGTAGGTTTCTCTCTTGTCCTGAACATAAATTTAAAGTGAGAGACACGAATTCCTGTCCATCATTCCAAAGAGAACGGCCTGATTCTGGACAAGGTTTGGGTGTCTTTATCCAAGATGCATGTTGTACTTGGTCAAGCTGTGAGGAACAAGCATTAAATTTGATATTGAATCATGTGACTCTAAGTGTGCCTCATGGTTCCTTGGTTGCAATTATTGGAGAGGTTGGTTCAGGTAAATCATCCCTGTTATATTCAATTCTTGGAGAAATGCAGCTTGTTCATGGCTCTATTTATTCCAATGAATCCATTTCTTATGTACCACAGGCATGTGCATTAGATGTTGATGTCTCATTGATGATTGGAGGTGACATGGCTTATATTGGAGAAAAAGGAGTCAACTTATCTGGTGGACAGAGAGCTCGTCTTGCTTTGGCAAGGGCGTTGTATCATGACTCAGATGTTGTTTTGCTTGACGATGTCCTGAGTGCCGTTGACGTACAAGTTGCTCAATGTATCTTACACAATGCTATTGCAATATCTTCTGCTGATCAGATTGTTGTAATGGACAAGGGACACATAAAGTGGATGGGAAATTCAGCTGACTTTCGTATTAATTCATATACAGAATTCTCTCCGTTGAATGAAATTGATTCAGCTTTAGAGAATCATGGACAATCTTGCAGCCCAAATCTTTCGTCCAAATCCAAGGAGCAGTCTCTTCATGGTACAGATATTGTGCATGCTGTGGAGGAAGCAGAGGAGATAGTTGAAGTTGAGTTGAGGAAAGAGGGAAAAGTTGAACTTAGAGTTTATAAGGCATTCTCTTTTGCATTTGGTGGATTACAAGCAGCAACTAAGGTACACAATAAACTGCTCAGCAAGCTTATCAATGCACCGGTGCACTTCTTTGATCAGACCCCTTGTGGGAGAATACTGAACAGATCAACATCAAGAGAATTACGAAGATTGGACAGTGTTTCTCGTTCTCCAATATACTCATCCTTCACTGAAACACTAGATGGATCATCAACTATTAGGGCGTTTAAATCTGAGAAGACTTCCTACACAGAGACAGTGGCAAGTTTGTGGCTTTCCTTGCGTCTTCAGTTATTAGCTGCACTTATCATCTCCTTCATAGCTGTGATGGCTGTTGTTGGATCTCATGGCAGTCTGCCAATCAACTTTGGCACCCCAGGACTGGTAGGATTGGCCCTCTCATATGCAGCTCCAATTGTGTCCCTGTTGGGGAGTTTTTTATCAAGCTTCACTGAAACAGAGAAGGAAATGGTTTCAGTTGAAAGAGCTCTTCAATACATGGACATTCCTCAAGAAGAACAAACTGAATGCCTATACTTAAATCCAGATTGGCCAAATCAAGGAGTTATCGAATTTCAATGTGTTACTTTGAAATATAGACCATCTTTGCCAGCTGCACTCTGCAATCTTAGTTTTACAATTGCTGGAGGAACACAAGTTGGAATAATTGGAAGAACAGGTGCTGGAAAGTCCAGTGTGTTAAATGCCCTTTTCTGCCTTACCCCAATATCTACAGGCTCTATTTCAATTGATGGCGTGGATATTAAAAATATTCGTGTCAAAGAACTACGTACACATTTGGCAATTGTTCCTCAGAGTCCATTCTTGTTTGAAGGATCATTAAGGGATAACCTAGATCCTTTCAAAATGAATGATGACTTAAAAATTTGGAATGCATTGGAAAAGTGCCATGTGAAAGAGGAAGTAGAAGTAGCTGGAGGGCTGGATGTTTTTGTAAAGGAAGGAGGGATGTCATTTTCGGTTGGCCAGCGGCAACTTATTTGCCTCGCACGTGCACTTCTGAAATCCTCCAAGGTTCTCTGTTTGGATGAATGCACAGCCAATGTAGACGTTCAAACTGCTTCACTTCTGCAAAATACCATATCCTGCGAATGCAAAGGAATGACAGTGCTCACAATTGCTCACCGGATTTCAACTGTTATAAATATGGATAGCGTTCTGATTCTTGACCATGGGAAACTGGCTGAACAGGGTAATCCACAAGTTCTTCTGAAAGATGACACCTCTTTATTTTCTAGTTTTGTTAGAGCTGCAGCTATGTAA 3207 0.4063 MEDFLSAICPNSPFVRILHKNIIGLLRFGMERSFAVNIVTVVMIVVLGFNQKIDRGVRRSDDQVLADLGDPLLSNDMELEEGGYHNLEHSGNFWDLMTFKFITPVMNHGVVKQLDSDDLLPLPTDMGPSSCHDVILSCWQSQLSNNGSNPSLFRALCSAYGWPYLRLGLLKVINDCIGFAGPLLLNKLIKFLQQAERSKFTNGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALYLLYAQVKFAFVSGLAITILLIPVNKWISQLIASATEQMMKEKDERIRRTGELLTNIRTLKMYGWEFLFSSWLMDTRTLEVKHLATRKYLDAWCVFFWATTPTLFSLFTFGLFVLMGHQLDAAMAIISSKRLSRFLSCPEHKFKVRDTNSCPSFQRERPDSGQGLGVFIQDACCTWSSCEEQALNLILNHVTLSVPHGSLVAIIGEVGSGKSSLLYSILGEMQLVHGSIYSNESISYVPQACALDVDVSLMIGGDMAYIGEKGVNLSGGQRARLALARALYHDSDVVLLDDVLSAVDVQVAQCILHNAIAISSADQIVVMDKGHIKWMGNSADFRINSYTEFSPLNEIDSALENHGQSCSPNLSSKSKEQSLHGTDIVHAVEEAEEIVEVELRKEGKVELRVYKAFSFAFGGLQAATKVHNKLLSKLINAPVHFFDQTPCGRILNRSTSRELRRLDSVSRSPIYSSFTETLDGSSTIRAFKSEKTSYTETVASLWLSLRLQLLAALIISFIAVMAVVGSHGSLPINFGTPGLVGLALSYAAPIVSLLGSFLSSFTETEKEMVSVERALQYMDIPQEEQTECLYLNPDWPNQGVIEFQCVTLKYRPSLPAALCNLSFTIAGGTQVGIIGRTGAGKSSVLNALFCLTPISTGSISIDGVDIKNIRVKELRTHLAIVPQSPFLFEGSLRDNLDPFKMNDDLKIWNALEKCHVKEEVEVAGGLDVFVKEGGMSFSVGQRQLICLARALLKSSKVLCLDECTANVDVQTASLLQNTISCECKGMTVLTIAHRISTVINMDSVLILDHGKLAEQGNPQVLLKDDTSLFSSFVRAAAM 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01921 1068 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 831 1064 IPR003439 GO:0005524
Spst1g01921 1068 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 184 363 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst1g01921 1068 SUPERFAMILY ABC transporter transmembrane region 156 377 IPR036640 GO:0005524|GO:0016020
Spst1g01921 1068 Gene3D - 480 587 IPR027417 -
Spst1g01921 1068 Gene3D - 404 479 IPR027417 -
Spst1g01921 1068 ProSitePatterns ABC transporters family signature. 967 981 IPR017871 GO:0005524|GO:0016887
Spst1g01921 1068 Pfam ABC transporter 849 995 IPR003439 GO:0005524
Spst1g01921 1068 FunFam ATP-binding cassette (ABC) transporter, putative 816 1065 - -
Spst1g01921 1068 Gene3D ABC transporter type 1, transmembrane domain 686 815 IPR036640 GO:0005524|GO:0016020
Spst1g01921 1068 Pfam ABC transporter transmembrane region 199 357 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst1g01921 1068 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 404 584 IPR003439 GO:0005524
Spst1g01921 1068 SUPERFAMILY ABC transporter transmembrane region 639 813 IPR036640 GO:0005524|GO:0016020
Spst1g01921 1068 Pfam ABC transporter 425 474 IPR003439 GO:0005524
Spst1g01921 1068 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 825 1056 IPR027417 -
Spst1g01921 1068 Gene3D - 816 1065 IPR027417 -
Spst1g01921 1068 SMART AAA_5 434 561 IPR003593 GO:0016887
Spst1g01921 1068 SMART AAA_5 857 1047 IPR003593 GO:0016887
Spst1g01921 1068 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 683 1064 - -
Spst1g01921 1068 CDD ABCC_MRP_domain2 829 1048 - -
Spst1g01921 1068 Gene3D ABC transporter type 1, transmembrane domain 637 685 IPR036640 GO:0005524|GO:0016020
Spst1g01921 1068 Gene3D ABC transporter type 1, transmembrane domain 141 378 IPR036640 GO:0005524|GO:0016020
Spst1g01921 1068 ProSitePatterns ABC transporters family signature. 503 517 IPR017871 GO:0005524|GO:0016887
Spst1g01921 1068 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 571 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01921 Spst-Chr1 27470270 27489139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01921 424 567 Calmodulin-binding Proteins AT2G36910 24.631 7.59e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01921 K05674 - gmx:100814181 672.544