Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01920 ATGTATTTGTCGGAGAAGCCGCGTCCAATCGACTTCTACAAGGAGGAAGGCACGCGGGACATGATGATCGAGGTCGTCTCCAACGGCGACCTCCCGCCGCCGCCGCCGCAGCATCACCCGCCGCCGATGATCCTCGGCGAGAGCAGCGGTGAGGACCCCGAGGTGGAGATCAAGGCCCCCAAGAAACGCGCGGAGACGTGGGTGCAGGACGAGACGCGCTCGCTCATTGGCCTTCGTCGCGAGATGGACGCGCTCTTCAACACCTCCAAGTCCAACAAGCACCTCTGGGAGCAGATATCGGCCAAGATGAGGGAGAAGGGTTTCGATCGCTCTCCCACCATGTGCACGGATAAGTGGCGCAACCTCCTCAAGGAGTTCAAGAAGGCCAAGCACCAGGACCGTGGAGGGAGTGGCTCCGCCAAGATGTCGTATTATAAGGAGATTGACGAGATCCTCAGAGAGAGGAGCAAAAATGTGCAGTACAAGAGCCCCACTCCTCCGCCTAAGGTTGATTCCTTCATGCAGTTTGCTGATAAAGGTATTGATGATACTAGCATCTCTTTTGGACCCGTAGAAGCTACTGGAAGACCGACGCTCAATCTTGAGAGAAGTTTGGATCATGATGGACATCCTCTTGCCATTACCACAGCTGATGCTGTTGCAGCAAGTGGAGTTCCTCCTTGGAATTGGAGAGAGACTTCTGGAAATGGTGGAGAAAGTCAGTCATGTTGTGGAAGGGTTATATCAGTTAAATGGGGTGATTATACAAGACGAATAGGTATTGATGGCACACCAGAAGCCATCAAAGAGGCAATTAGGGCTGCTTTTAGGTTGAGAACTAAACGCACATTTTGGTTGGAAGATGAAGACCAGATTATCCGAAGTATTGACCGGGAAATGCCTTTAGGAAGTTACACTCTTCACCTTGATGAAGGTATGGCTATTAAATTATGTCTCTATGATGAGTCTGAGCATCTTCCTGTGCATACTGAAGACAAGGTATTTTACACTGAAAATGATTACCGTGATTTTCTGACTCGCCGGGGTTGGGTATGCCTAAGAGAATTTGACGGATATAGAAATATAGACAACTTGGATGATCTTAGACCTGGTGCCATATACCGTGGTGTGAGTTGA 1137 0.5004 MYLSEKPRPIDFYKEEGTRDMMIEVVSNGDLPPPPPQHHPPPMILGESSGEDPEVEIKAPKKRAETWVQDETRSLIGLRREMDALFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGGSGSAKMSYYKEIDEILRERSKNVQYKSPTPPPKVDSFMQFADKGIDDTSISFGPVEATGRPTLNLERSLDHDGHPLAITTADAVAASGVPPWNWRETSGNGGESQSCCGRVISVKWGDYTRRIGIDGTPEAIKEAIRAAFRLRTKRTFWLEDEDQIIRSIDREMPLGSYTLHLDEGMAIKLCLYDESEHLPVHTEDKVFYTENDYRDFLTRRGWVCLREFDGYRNIDNLDDLRPGAIYRGVS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01920 378 Gene3D - 67 129 - -
Spst1g01920 378 ProSiteProfiles Myb-like domain profile. 59 123 IPR001005 -
Spst1g01920 378 PANTHER FI21293P1 46 352 - -
Spst1g01920 378 FunFam trihelix transcription factor GT-1 67 129 - -
Spst1g01920 378 SMART sant 63 125 IPR001005 -
Spst1g01920 378 Pfam Myb/SANT-like DNA-binding domain 66 151 IPR044822 -
Spst1g01920 378 MobiDBLite consensus disorder prediction 25 54 - -
Spst1g01920 378 CDD GT1 65 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01920 Spst-Chr1 27459585 27463929 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01920 20 377 Trihelix Transcription Factor Family AT3G25990 69.755 0.0 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Spst1g01920 Myb_DNA-bind_4 1.9e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01920 - - ccaj:109807736 743.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01920 1 27459585 27463929 Spst1g01920 1 27459585 27463929 ECH