Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01904 ATGGATGTTGCCGAGGTTGAAGAAAATCTTTTTGCATCAAGCGATGCCAAGTTACATGGAGATATGTGCAAGCGTCTTTCTGCAATATACTGCAAGATATTGTCATTATTTCCTTCTTTAGAAGCAGCTAGGCCTAGGAGCAAATCTGGAATTCAGGCATTATGTTCATTACATGTAGCCTTAGAAAAGGCAAAGAATGTTCTTCGACACTGCTCAGAGTCTAGTAAACTTTACTTGGCTATAACTGGGGATTCTGTTCTTCTAAAATTTGAAAAGGCTAAATGTGCTCTTGAGGATAGTCTTAAACGGGTGGAAGATATTGTTCCTCAATCTATTGGTTGTGAGATTGATGAAATTGTGAACGAACTTGCAAGTACAGTATTTGCACTTGACCCATTAGAGAAGCAAGTTGGGGATGATCTAATTGCGTTGCTTCAAAAGGGAAGAAAGCTTAATGACTCTAATGACAGTAATGAACTTGAATGTTTTCATCTAGCTGCTACCTCACTTGGAATCACTTCTTCAAGAGCAGCTCTTACAGAAAGAAGATCTCTAAAAAAACTCATAGAAAGAGCTCGGGTTGAGGATGACAAGCGGAAAGAATCAATTATTGCTTACCTTTTACACCTTATGAGGAAATATTCCAAATTATTTAGAAGTGAGTTCTCTGATGATAATGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTGTTCAGAGATCTCTTGAAGATGGCATTCCTGGTGGTCATTGTCATGTCTTTGACAGACAGCTTTCAAAACTTAGTTCCTTTAATTTTAAGCCAAATAATAGGGAATCACGGCAGATACTAATTTTACCTGAAGAGTTACGATGCCCAATATCACTGCAACTTATGAGTGATCCTGTTATAATTGCTTCTGGGCAAACATATGAAAGGGTTTGTATAGAAAAATGGTTCAGAGATGGGCACAACACCTGCCCAAAGACTCAACAGAAACTTTCACATCTTTCTTTGACTCCTAATTATTGTGTTAAGGGTCTTGTGGCTAGTTGGTGTGAACAGAATGGAGTTCCTATTCCTGAAGGCCCTCCTGAATCTCTTGATTTCAACTACTGGAGATTGGCATTATCAGACACTGAATCGACAAATTCAAGATCCGCAAACAGTGTTGGTTCTTGCAAGTTGAAGGGTGTCAAAGTTGTTCCTGTTGAAGAGAGTGGTATCTCAGAGCAAATAGCCGGGAATTCAACTGAAAATTTTCCTGCACAAGAGGAAGATAATGAGCGATATCTTAGTTTTCTTAAAGTCTTGTCAGAGGGGAACAATTGGATGAGGAAGTGCAAAGTTGTTGAACAGTTGAGGCTGTTGCTGCGGGATGATGAAGAAGCCAGGATTTTTACGGGGGCTAATGGATTTGTTGATGCACTTATGCAGTTTCTGCGATCAGCTGTGCATGAAGGGAATGTGACGGCTCTTGAAAATGGGGCTATGGCTCTGTTCAACCTGGCTGTGAATAACAACAGAAATAAGGAAATTATGATATCAGCAGGGATCTTGTCGTTGTTGGAGCAAATGATTTCAAAAACTAGTTCCTATGGTTGTGCGGCCGCCCTGTATCTGAATCTTTCTTGCCTTGAAGAAGCCAAGGACGTGATTGGCACAAGTCCGGCTGTCCAGTTCCTTATCCAGATTCTTCAAGCCAAGACAGAAGTCCAGTGCAAGATAGATTCCCTCCATGCACTCTATAACCTTTCTACTGTGTCCTCCAATATTCCGCACCTACTTTCATCTGGCATCATTGATAGCCTACAATCCCTTCTTGTCGACCAGGGCGATTGCACTTTGGCAGAAAAATGTATAGCTGTTTTGATAAATTTGGCGGTTTCTCCAGCAGGAAGAGAGCAAATGATTTTGTCTCCCGCACTCATAAGTTCCTTGGCTTCCACGCTTGATACCGGTGAGCTCATGGAGCAGGAGCAAGCTGCCTCTTGTCTCCTAATTTTGTGTAACAGGAGTGGGGAATGTTGTGAGATGGTCCTGCAAGAAGGGGTTATCCCTGCATTGGTGTCATTAACGGTGAATGGAACCTCGAGAGGAAGAGAAAAGGCTCAGAAACTCTTGATGGTCTTCCGAGAGCAGCGACAACGGGAGCAATCACCTGTTACGACAATCCATCGTGAACCTGAAAGTAGTGATTTGCCCATGCCTCCTCCTGAAACGAAACCTTTATGTAAATCAATATCTAGAAGAAAGGTGGTAGGGAAAGCTTTTAGCTTTCTCTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAA 2298 0.4178 MDVAEVEENLFASSDAKLHGDMCKRLSAIYCKILSLFPSLEAARPRSKSGIQALCSLHVALEKAKNVLRHCSESSKLYLAITGDSVLLKFEKAKCALEDSLKRVEDIVPQSIGCEIDEIVNELASTVFALDPLEKQVGDDLIALLQKGRKLNDSNDSNELECFHLAATSLGITSSRAALTERRSLKKLIERARVEDDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQRSLEDGIPGGHCHVFDRQLSKLSSFNFKPNNRESRQILILPEELRCPISLQLMSDPVIIASGQTYERVCIEKWFRDGHNTCPKTQQKLSHLSLTPNYCVKGLVASWCEQNGVPIPEGPPESLDFNYWRLALSDTESTNSRSANSVGSCKLKGVKVVPVEESGISEQIAGNSTENFPAQEEDNERYLSFLKVLSEGNNWMRKCKVVEQLRLLLRDDEEARIFTGANGFVDALMQFLRSAVHEGNVTALENGAMALFNLAVNNNRNKEIMISAGILSLLEQMISKTSSYGCAAALYLNLSCLEEAKDVIGTSPAVQFLIQILQAKTEVQCKIDSLHALYNLSTVSSNIPHLLSSGIIDSLQSLLVDQGDCTLAEKCIAVLINLAVSPAGREQMILSPALISSLASTLDTGELMEQEQAASCLLILCNRSGECCEMVLQEGVIPALVSLTVNGTSRGREKAQKLLMVFREQRQREQSPVTTIHREPESSDLPMPPPETKPLCKSISRRKVVGKAFSFLWKSKSYSVYQC 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01904 765 CDD RING-Ubox_PUB 280 332 IPR045210 -
Spst1g01904 765 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Spst1g01904 765 SMART arm_5 581 622 IPR000225 GO:0005515
Spst1g01904 765 SMART arm_5 539 580 IPR000225 GO:0005515
Spst1g01904 765 SMART arm_5 454 498 IPR000225 GO:0005515
Spst1g01904 765 SMART arm_5 623 664 IPR000225 GO:0005515
Spst1g01904 765 SMART arm_5 500 538 IPR000225 GO:0005515
Spst1g01904 765 MobiDBLite consensus disorder prediction 709 732 - -
Spst1g01904 765 SUPERFAMILY ARM repeat 427 706 IPR016024 -
Spst1g01904 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 352 IPR013083 -
Spst1g01904 765 PANTHER U BOX DOMAIN-CONTAINING 23 705 - -
Spst1g01904 765 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Spst1g01904 765 Gene3D - 402 718 IPR011989 -
Spst1g01904 765 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Spst1g01904 765 SUPERFAMILY RING/U-box 274 354 - -
Spst1g01904 765 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Spst1g01904 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01904 Spst-Chr1 27278968 27282581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01904 1 764 U-box Gene Family AT1G24330 64.442 0.0 994
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01904 - - gmx:100804344 1314.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01904 1 27278968 27282581 Spst1g01904 1 27278968 27282581 ECH
Spst1g01904 1 27278968 27282581 Spst3g00139 3 2514498 2518072 PCT