Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01897 ATGGTCAACCCAATGAAACCTGGTACAAGAATCCAAGCTGTTAACCTATTTTGCTTCGTTCCTCAGCCGTTGTTCTTCCTCACCGGTTTGGACGAAGTAGGAGAAGCCGCCATGGTGAAGTATTCCAGAGAACCCGACAATCCCACTAAGTCCTGCAAGGCAAGAGGCTCCGATCTCAGAGTGCATTTCAAGAACACTAGGGAAACCGCATTTGCCATCAGGAAATTGCCCCTGGTTAAAGCTAAAAGATACTTGGAGGATGTGTTGGCCCACAAACAAGCCATCCCATTCCGACGCTTCTGCCGTGGTGTGGGGAGGACAGCTCAGGCCAAGAACAGGCACTCCAATGGGCAAGGTCGCTGGCCCGTGAAGTCAGCTAAGTTCATCCTTGATTTGCTGAAGAACGCTGAGAGTAATGCTGAAGTTAAAGGTTTGGATGTGGATACTCTGTACATTTCTCATATCCAGGTTAACCAAGCACAGAAGCAAAGACGCCGTACCTACCGTGCTCATGGAAGAATCAACCCTTACATGTCATCTCCCTGTCATATTGAGCTGATATTATCTGAGAAGGAACAGCCTGTGAAGAAAGAGCCTGAGGCCCAGTTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGTGCTTCATCTTAA 657 0.4855 MVNPMKPGTRIQAVNLFCFVPQPLFFLTGLDEVGEAAMVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDTLYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEQPVKKEPEAQLATSKKKGALRSGASS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01897 218 CDD Ribosomal_L22 52 188 IPR001063 GO:0003735|GO:0005840|GO:0006412
Spst1g01897 218 Gene3D Ribosomal protein L22/L17 38 217 IPR036394 GO:0003735|GO:0005840|GO:0006412
Spst1g01897 218 PANTHER 60S RIBOSOMAL PROTEIN L17 38 210 IPR005721 GO:0003735|GO:0006412|GO:0015934
Spst1g01897 218 ProSitePatterns Ribosomal protein L22 signature. 164 188 IPR018260 GO:0003735|GO:0005840|GO:0006412
Spst1g01897 218 Pfam Ribosomal protein L22p/L17e 54 189 IPR001063 GO:0003735|GO:0005840|GO:0006412
Spst1g01897 218 MobiDBLite consensus disorder prediction 193 218 - -
Spst1g01897 218 NCBIfam 50S ribosomal protein L22 41 191 IPR005721 GO:0003735|GO:0006412|GO:0015934
Spst1g01897 218 FunFam 60S ribosomal protein L17 38 212 - -
Spst1g01897 218 Hamap 50S ribosomal protein L22 [rplV]. 37 191 IPR005721 GO:0003735|GO:0006412|GO:0015934
Spst1g01897 218 SUPERFAMILY Ribosomal protein L22 38 191 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01897 Spst-Chr1 27140440 27142127 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01897 38 211 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 89.080 1.03e-116 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01897 K02880 - gmx:100305777 352.829