Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01896 ATGGTAAACAAGGAAGAGTGGTATCCATTCTATTGTGACCTAGTTTGCTTCCTTCGTCAGTCGTTGTTCTTCTTCTACCGCCTGCAAGAAGTTGAAGAAGAAGCCGCCATGGTGAAGTACTCAAGAGAACCCGACAATCCTACCAAGTCCTGCAAGGCAAGAGGCGCCGATCTCAGAGTGCATTTCAAGAACACTAGGGAGACCGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCTAAAAGATACTTGGAGGATGTGTTGGCCCACAAACAAGCCATCCCATTCCGACGCTTCTGCCGTGGTGTTGGGAGGACAGCTCAGGCCAAGAACAGGCACTCCAATGGGCAAGGTCGCTGGCCCGTGAAGTCAGCTAAGTTCATCCTTGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTAGATGCCCTTTACATCTCTCATATCCAGGTTAATCAAGCACAGAAGCAAAGACGCCGCACCTATAGAGCTCATGGAAGAATCAACCCTTACATGTCATCTCCCTGCCATATTGAGCTGATATTATCTGAAAAAGAAGAGTCAGTGAAGAAAGAGCCTGATACTCAATTGGCTACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGTGCTTCGTCTTAA 654 0.4755 MVNKEEWYPFYCDLVCFLRQSLFFFYRLQEVEEEAAMVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEESVKKEPDTQLATSKKKGALRSGASS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01896 217 MobiDBLite consensus disorder prediction 192 217 - -
Spst1g01896 217 Pfam Ribosomal protein L22p/L17e 53 188 IPR001063 GO:0003735|GO:0005840|GO:0006412
Spst1g01896 217 ProSitePatterns Ribosomal protein L22 signature. 163 187 IPR018260 GO:0003735|GO:0005840|GO:0006412
Spst1g01896 217 FunFam 60S ribosomal protein L17 37 211 - -
Spst1g01896 217 SUPERFAMILY Ribosomal protein L22 37 190 IPR036394 GO:0003735|GO:0005840|GO:0006412
Spst1g01896 217 Gene3D Ribosomal protein L22/L17 37 216 IPR036394 GO:0003735|GO:0005840|GO:0006412
Spst1g01896 217 Hamap 50S ribosomal protein L22 [rplV]. 36 190 IPR005721 GO:0003735|GO:0006412|GO:0015934
Spst1g01896 217 CDD Ribosomal_L22 51 187 IPR001063 GO:0003735|GO:0005840|GO:0006412
Spst1g01896 217 PANTHER 60S RIBOSOMAL PROTEIN L17 37 209 IPR005721 GO:0003735|GO:0006412|GO:0015934
Spst1g01896 217 NCBIfam 50S ribosomal protein L22 40 190 IPR005721 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01896 Spst-Chr1 27128225 27136270 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01896 37 210 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 90.230 2.06e-117 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01896 K02880 - gmx:100305777 354.369