Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01893 ATGGTTTCTATGGCGGAGGAAGAAGAGAACGGAGTGTCGATTCAACTCGAATTCCCGAAGGGTCGCGTGAAGAAGATTATGACGCTGGACAAGGATATAAAGAGAGTGAGTTCAGAAGCGTTGTTCCTGGTGTCGCGATCCACGGAGTTATTCCTCCAATTTCTGGCTGAAAAATCTGCGAACGTTGCGATTGAGAAGAAACGGAAGACCGTTAATCTCGAACACGTGAGAATGGCCGTAAAGAGGCACCAGCCAACCAGGGATTTTCTCCTCGATGAGCTTCCGCCGCCGTCTCAGCCCGCCAAGCCCGATAAATCCACTCAGCCCGTGGCTCGCCCCAAACATGATGCCCCTCCGCCTGGTACTCGCCGCATCGATCAATTTTTTCGAAAGCCAGATCCTCAAAACCCAGCCGAATCGCCTGAAAATCCTGGCCAAGCCCAATCGCCTGAAATATCAGCCCAAGCCCAATATCCTGACATTCCAGCTCTAGTCCAATCGCCTGAAATTCTAGCGCAAGCTCAATCGCCAGTACCCGTAGATGAGTCTTAG 552 0.5163 MVSMAEEEENGVSIQLEFPKGRVKKIMTLDKDIKRVSSEALFLVSRSTELFLQFLAEKSANVAIEKKRKTVNLEHVRMAVKRHQPTRDFLLDELPPPSQPAKPDKSTQPVARPKHDAPPPGTRRIDQFFRKPDPQNPAESPENPGQAQSPEISAQAQYPDIPALVQSPEILAQAQSPVPVDES 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01893 183 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 130 - -
Spst1g01893 183 Gene3D Histone, subunit A 1 95 IPR009072 GO:0046982
Spst1g01893 183 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 17 80 IPR003958 -
Spst1g01893 183 MobiDBLite consensus disorder prediction 140 155 - -
Spst1g01893 183 FunFam Nuclear factor Y, subunit C13 4 95 - -
Spst1g01893 183 MobiDBLite consensus disorder prediction 82 183 - -
Spst1g01893 183 SUPERFAMILY Histone-fold 16 83 IPR009072 GO:0046982
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01893 7 131 CCAAT-HAP5 Transcription Factor Family AT5G43250 68.000 1.35e-50 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Spst1g01893 CBFD_NFYB_HMF 6.1e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01893 - - vun:114164970 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01893 1 27116836 27117387 Spst1g01893 1 27116836 27117387 ECH