Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01880 ATGAAAAAAAGATGCTTTTTTTGGGGGGGAGGGGGTGGGGCTCCCCGTTTCTTCTTCTCGCTCATTCCTTACACTTTTGGGGGTTTATCATTTTCTTGGCAAAGTGGGATTGCTGAAAGCTTCGAAGTCAAGGGCCTAAACTGTGGTGTGTTGGCCAGAGTGTTGGAAGTTCTGATAAGTCAAGAAGCTTCCCATGTTGAAAGGGAAGTTTTGGTGATAATTCCCCTACGGGCATCTCAGCTGGAAATCCATGAATTTGCTGTTCATAGGTATTTTCCTGGACTTGTCATGGAGTGGAATGCAAAATCTCTCGGACAATGGGACTGGGAGCACTTATTCTTCTTCAATACAAAAGCAACGGAAAATCCCAGGTTACCGACAACTGATTGTAGCAACGAAACAGATCGAGAAATCAATGTTGGGTTGTTGTATCCGTCAGGTGGTAGTGCTTGTTCTGGCTCTGAACTAGTACACGCTTCTTCATCAAGGAGCTCAAAATCAGCATCCAACAACTCATCATCAATTGGGGATAGCAAGGCATCGGTATTGACTCTGGAAGGATCACAGGATGATTCCACTGGGAAGAAAGAATTGTGCAACGGAGAGCCAGTTGACACTTCTCCAGCAGCAGTACCTTCTCCAGTCTCTGGTGAACCCCTACTTTCTCTGAAGCTTGGGAAAAGATTTTACTTTGAGGATGTATGCACAGGAAGTGATTCAAAGAAACAATCTTCCTTTGAGGTTCCCGTTTCATCAGCAAAGAAATATAAAACCAGTAGTCAGAATTTGCAGCATCCAAGCTGCCAGGTGGAAGGCTGTGGCCTTGACCTCTCATCCGCTAAAGATTATCATCGCAAACACAGAGTCTGTGAAGCTCATTCCAAATCCCCGAAGGTGGTTATAGCTGGTTTGGAACGGCGTTTTTGCCAGCAATGTAGCAGGTTCCATGCTCTGTCAGAGTTTGATGACAAAAAAAGAAGCTGCAGACGACGTCTTTCAGATCACAATGCAAGGCGTCGCAAACCGCAGCCTGACTCAATCCAATTAAATCCATCAGCTTTGTCTTCATCACCCTATGATGGGAGACAAATAATGAGCCCATTTGCATTTTCAAGGACTGCTACAAATTTGGCGTGGCAGGATATGCACAGCAACAAGCTCCCCCAGACAAAAGATTTTCTTCCGAAGCCTGCAAAAGCCTTCAATAAGATACCAAGTATTGTCTCTATGCTTTCTGATGATTCCAGTGGCCTTCTAACATCCAGAAGCATAGCAGCGAAGACTATTGTTCCAGGTTTAGAAGATCCCAATTCCATTAGTTCGTGTGATCCAGATGGTGCACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAAGCAATTCATGGGGTCCATATGAGACTAAATCCCTTTCCCTGGAACACTCCACACGAACAAGTGGCATCACTCAGTCCATAACACACGCAATGACTCACCACCACCTGCAGCAGCATCAGCAGCAGCGCTTACCACTTGCTTCCGCTTCAGATTATTGGCACACCGATCATCAACAACAACCATCCCCATCCACCGTGAGCATGTGTATCTCATTCTCAGATTGTGATAGCAACAATCGCTTTCAAGATTTTCAGCTGTTGAGCGCACCCTATGACTCGGGTTTCCCGTGCAACCAGTTGGATTAA 1680 0.456 MKKRCFFWGGGGGAPRFFFSLIPYTFGGLSFSWQSGIAESFEVKGLNCGVLARVLEVLISQEASHVEREVLVIIPLRASQLEIHEFAVHRYFPGLVMEWNAKSLGQWDWEHLFFFNTKATENPRLPTTDCSNETDREINVGLLYPSGGSACSGSELVHASSSRSSKSASNNSSSIGDSKASVLTLEGSQDDSTGKKELCNGEPVDTSPAAVPSPVSGEPLLSLKLGKRFYFEDVCTGSDSKKQSSFEVPVSSAKKYKTSSQNLQHPSCQVEGCGLDLSSAKDYHRKHRVCEAHSKSPKVVIAGLERRFCQQCSRFHALSEFDDKKRSCRRRLSDHNARRRKPQPDSIQLNPSALSSSPYDGRQIMSPFAFSRTATNLAWQDMHSNKLPQTKDFLPKPAKAFNKIPSIVSMLSDDSSGLLTSRSIAAKTIVPGLEDPNSISSCDPDGAQDVNRALSLLSSNSWGPYETKSLSLEHSTRTSGITQSITHAMTHHHLQQHQQQRLPLASASDYWHTDHQQQPSPSTVSMCISFSDCDSNNRFQDFQLLSAPYDSGFPCNQLD 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01880 559 MobiDBLite consensus disorder prediction 161 189 - -
Spst1g01880 559 MobiDBLite consensus disorder prediction 332 359 - -
Spst1g01880 559 MobiDBLite consensus disorder prediction 343 359 - -
Spst1g01880 559 MobiDBLite consensus disorder prediction 161 216 - -
Spst1g01880 559 FunFam Squamosa promoter-binding-like protein 14 259 329 - -
Spst1g01880 559 Gene3D - 258 329 IPR036893 GO:0003677|GO:0005634
Spst1g01880 559 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 154 517 IPR044817 GO:0003677
Spst1g01880 559 ProSiteProfiles Zinc finger SBP-type profile. 265 342 IPR004333 GO:0003677
Spst1g01880 559 Pfam SBP domain 268 341 IPR004333 GO:0003677
Spst1g01880 559 SUPERFAMILY SBT domain 266 347 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01880 Spst-Chr1 26975231 26979928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01880 97 514 SBP-box Gene Family AT5G43270 38.063 7.41e-61 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Spst1g01880 SBP 8.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01880 - - gmx:100781289 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01880 1 26975231 26979928 Spst1g01880 1 26975231 26979928 ECH