Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01875 ATGGTTGCTTCACTTATAGCTTCTGGTGCAACTGCTGGAGCGGTCACAGATCCAAGTTCACAAGATCCAACCGGTAAAACTGCTGCATCTATTGCAGCCTCCCATGGCCATAAGGGACTAGCAGGTTATCTTTCGGAGGTACACCTGACAAGCCATTTGTCATCCCTCACATTGACAGAGAGTGACATTTCTAAAAGATCTTCTGAGCTTGAAGCCGAGTTCACTGTTTGTAGTGTCTCTAAAGAAAATCTTATGGCCAATGAGGATCAGGTTTCACTAAAAGCTTCCTTGGATGCTGTCAGAAATGCAGCTCAGGCAGCTGCACGGATACAAGCTGCTTTTCGTGCGCATTCTTTTAGAAAAAGGAAAGAAAGAGAAGCTGCCGCCAGATTTCTAGATGGATATTGTAGTGAAGCTGATGGCAACGTTTCAGTGCTTTCTGCCATATCAAACCTTAGTTCTCGGAGCTTGGGTGATTACCATGTAGCTGCCTTGTCGATTCAGAAGAAATATCGAGGGTGGAAAGGTCGGAAAGAATTCTTAGCATTGCGCCAGAAAGTAGTTAAGATACAGGCCATTGTGAGGGGTTACCAGGTTCGGAAGCAATACAAGTTACTATTATGGGCAGTTGGAATCTTGAACAAGGTTGTGCTCCGATGGAGGAGAAAACGAGTTGGCATAAGTAGTGTCCGGCAAGAAATTGAATCAAATGAAGAAGAAAGTGATGATGAAGATTTTCTCAACGTGTTCCGAAAAGAGAAAGTAAACGCAGCAATTGAGAAGGCTTTGAAGCGGGTGCTTTCCATGGTCAAGTCTAAGGGTGCTCGTCAGCAATACAGGCGCTTGCTTTCATTGTATCGTCAAGCCAAGCCTGAATGTGACAGCACAAGTGATAAAGCACCGTTATCAACTTCGGCAGACGATGACTGGAATCAGATTTTGGAGAACATCTGGCCTTCCTAG 963 0.4486 MVASLIASGATAGAVTDPSSQDPTGKTAASIAASHGHKGLAGYLSEVHLTSHLSSLTLTESDISKRSSELEAEFTVCSVSKENLMANEDQVSLKASLDAVRNAAQAAARIQAAFRAHSFRKRKEREAAARFLDGYCSEADGNVSVLSAISNLSSRSLGDYHVAALSIQKKYRGWKGRKEFLALRQKVVKIQAIVRGYQVRKQYKLLLWAVGILNKVVLRWRRKRVGISSVRQEIESNEEESDDEDFLNVFRKEKVNAAIEKALKRVLSMVKSKGARQQYRRLLSLYRQAKPECDSTSDKAPLSTSADDDWNQILENIWPS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01875 320 SMART iq_5 102 124 IPR000048 GO:0005515
Spst1g01875 320 SMART iq_5 182 204 IPR000048 GO:0005515
Spst1g01875 320 SMART iq_5 159 181 IPR000048 GO:0005515
Spst1g01875 320 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 211 IPR027417 -
Spst1g01875 320 ProSiteProfiles IQ motif profile. 103 130 IPR000048 GO:0005515
Spst1g01875 320 ProSiteProfiles IQ motif profile. 160 189 IPR000048 GO:0005515
Spst1g01875 320 ProSiteProfiles IQ motif profile. 183 207 IPR000048 GO:0005515
Spst1g01875 320 FunFam Calmodulin-binding transcription activator 2 159 207 - -
Spst1g01875 320 Pfam IQ calmodulin-binding motif 162 180 IPR000048 GO:0005515
Spst1g01875 320 Pfam IQ calmodulin-binding motif 185 204 IPR000048 GO:0005515
Spst1g01875 320 Gene3D - 160 208 - -
Spst1g01875 320 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01875 Spst-Chr1 26932471 26934925 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01875 1 296 CAMTA Transcription Factor Family AT1G67310 63.000 1.75e-99 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01875 K21596 - gmx:100791430 447.203