Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01874 ATGAGAGAACTCTATCTTTGGATCGAACAAGGTTTGGAAGTTGAGTTTGACTTTACTATTTACACTCACATTTTGCAGGGAAAATCCAATTCTGCACCTGTCACACAATTGTCATCGGGTTCCTCCCTTGTTTTTAGTGCGAGTCATAGCTTGTATGCTGCTCACAACCCTGGGACATCATCCACGTTCGCAGATTCAAGTGAACCTAATCAAAATTTCTCTAGTCCTGGGTCTTTAGAAGTTACATCTGAAGCACAAGCCTTGCGCCAATTGGAAAAAGAACTGAATTTAAATGAGGACAGCTTCAATGAAATTGCACTTAATTTAATTCCATGTCAAGATGAAAGGGTGATTTATAAGCAAGATAAATCTGCCACTTTGTCTGGACCAAATGATCAAGGACAACATTTTCATAGATATAATGGAAGACAAGATGACAGTGACACATATTATCATGACTTACTTGATGATTGTCCTGATGGAAATGAAAAAACTATATACTGGAACGAGGTGCTTGAAGCGTCTAAGTCCTTACCTGTGACCAATTTACCTGATCAATATGCATATGAGACAATTGAAAATGAAAAGTCATTATTTTCTTCAGGAAGGGCAATGCTTGCCAACGTGGAAAACAATCAGTGGCTGAATTCCAACAGTAATAATGTTGAGAACTATTCAAGCTTGGCTATTGTACAGAAACAGAAATTTTCAATTAGGGCAGTCTCCCCAGAATACTGTTATGCCGCTGAGACTACAAAGGTTATCATTATTGGGTCATTTCTCTGTCATCACTCGGATTCTACCTGGGCCTGTATGTTTGGTGATGTTGAAGTTCCTGCTCAGATTATTCAGGATGGCGTAATCTGTTGTGAAACTCCATCCATTCTACTTGGAAAGGTTAATTTGTGCATTACTTCAGGAAATAGGGTGCCTTGCAGCGAAGTGAGAGAGTTTGAGTTTCGAAATAAGACTACTAGTTGCCCTCGCTGTAATTCATTGGAAACAGAAGATCTGTTATTACTTGTGCGATTTGCAGAGATGGTCCTCTCTGCTTCAAATAAAAAGGATGACAACATAGAATCTGGAAGTCAACTTTCGACAGAACAGAAAGATGGTGATGATTCATGGAGCCATATGATAGACACTCTTCTGGATGGCACTGGAAAATCATCTGAAACTGTAAACTGGCTTCTAGAAGAGCTGCTGAAGGATAAGCTGCAGCTCTGGCTCTCTAACCCATCCCATGAAAGAGATGAAGGGACAGGCTGTTCTTTGTCCAAGAAAGAGCAGGGGATTATACACATGGTTTCTGGGTTGGGTTTTGAGTGGGCCTTGAACCCCATTCTCAGTTGCGGTGTGAATATAAATTTTCGTGACATCAATGGATGGACGGCTCTTCATTGGGCTGCACGGTTTGGGAGGTAA 1425 0.407 MRELYLWIEQGLEVEFDFTIYTHILQGKSNSAPVTQLSSGSSLVFSASHSLYAAHNPGTSSTFADSSEPNQNFSSPGSLEVTSEAQALRQLEKELNLNEDSFNEIALNLIPCQDERVIYKQDKSATLSGPNDQGQHFHRYNGRQDDSDTYYHDLLDDCPDGNEKTIYWNEVLEASKSLPVTNLPDQYAYETIENEKSLFSSGRAMLANVENNQWLNSNSNNVENYSSLAIVQKQKFSIRAVSPEYCYAAETTKVIIIGSFLCHHSDSTWACMFGDVEVPAQIIQDGVICCETPSILLGKVNLCITSGNRVPCSEVREFEFRNKTTSCPRCNSLETEDLLLLVRFAEMVLSASNKKDDNIESGSQLSTEQKDGDDSWSHMIDTLLDGTGKSSETVNWLLEELLKDKLQLWLSNPSHERDEGTGCSLSKKEQGIIHMVSGLGFEWALNPILSCGVNINFRDINGWTALHWAARFGR 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01874 474 SUPERFAMILY E set domains 238 321 IPR014756 -
Spst1g01874 474 MobiDBLite consensus disorder prediction 355 374 - -
Spst1g01874 474 Gene3D Immunoglobulins 231 326 IPR013783 -
Spst1g01874 474 Gene3D - 397 474 IPR036770 -
Spst1g01874 474 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 49 474 - -
Spst1g01874 474 MobiDBLite consensus disorder prediction 355 370 - -
Spst1g01874 474 MobiDBLite consensus disorder prediction 59 79 - -
Spst1g01874 474 CDD IPT 237 321 - -
Spst1g01874 474 SUPERFAMILY Ankyrin repeat 432 473 IPR036770 -
Spst1g01874 474 FunFam Calmodulin-binding transcription activator 2 231 325 - -
Spst1g01874 474 Pfam IPT/TIG domain 237 308 IPR002909 -
Spst1g01874 474 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01874 Spst-Chr1 26927828 26931792 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01874 234 473 CAMTA Transcription Factor Family AT1G67310 58.400 2.66e-91 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01874 K21596 - gmx:100787909 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01874 1 26927828 26931792 Spst3g01855 3 33519182 33528722 PCT