Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01869 ATGGGAAGGGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAACGAAGGAACGGGCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCCGAGCTTGCTCTCATCATCTTCTCCACTAGAGGAAAGTTGTACGAGTTTTGCAGCACTTCAAGCATCTTGAGTGTTTCTGCGGCTGTGTCGATGTTAGATCTGCAACTGGAAACGCAAATCACTGTTGTATTAACTATTCTCTGTTTTCTAGCAGATCTGGTTCAAAAGCTTTCCCCAAAGGCAATTTCGGGTTTTGCTCAGGCTTCTGTTTCTGTGCAAGTGTTGAGAAAAGAAGCACATCATGAATTAATTGTTTCTTCTGTGGCAAAGAGGTACCAGAAATGCAACTATGGAGCGCCTGAGGCCAATGCATCAACAAAGGAAGCCTTGGTATTGGAGTTAAGCAGTCAACAAGAATATTTGAAGCTGAAAGCAAGGTATGAAGCTCTACAACGTTTTCAAAGGAACCTTATGGGAGAAGATCTTGGCCCTCTAAGCAGCAATGAACTTGAATCACTTGAAAGGCAGCTAGATTCCTCTTTGAAGCAAATCAGATCAACACGGACCCAATTCATGCTGGATCAACTTTCTGATAGTCAGCGCAAGTTGGAAGAGTATCAAATAAATCAATTTCAACTGAATCCCAATGGTGAAGATATGGGGTATGACCGTCATCCAGGTCAAAACCAAGGCGATGCTCTCTTTCAACCATTGGAGTGTGAGCCAACACACCGTCATGAGAGGAAGAAGAGGAGGACACGAAGACGAACAATCACGCGCTTTGTACGAGCTCTCCGCTCTCGTTCTCAACCTCATCCGATCGCCTCCCGCGCCTTTGCCCTTTTCCGACGACATTCCGCCGCCGCCGGCGTCTCGACGCTCGGCGCCGCCTCAGATATCGCCGGCGGGGTTCGCGTCGCTGCTGCTGGGAATCTCGCTGGCCCTGATGCTGTGTGGATCGGTGACGTTCTTCATCGGGTTCGTGTTGATGCCGTGGGTTCTGGGATTGGTGATGCTCTTCTTCGTCGCCGGAGTCCTCTCCAGCCTCTCCGTCTTCGGCCGCTCCATTCTCTGCTACGCCACCGCGCCATCCTCGCCGCGTAA 1167 0.4919 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSTRGKLYEFCSTSSILSVSAAVSMLDLQLETQITVVLTILCFLADLVQKLSPKAISGFAQASVSVQVLRKEAHHELIVSSVAKRYQKCNYGAPEANASTKEALVLELSSQQEYLKLKARYEALQRFQRNLMGEDLGPLSSNELESLERQLDSSLKQIRSTRTQFMLDQLSDSQRKLEEYQINQFQLNPNGEDMGYDRHPGQNQGDALFQPLECEPTHRHERKKRRTRRRTITRFVRALRSRSQPHPIASRAFALFRRHSAAAGVSTLGAASDIAGGVRVAAAGNLAGPDAVWIGDVLHRVRVDAVGSGIGDALLRRRSPLQPLRLRPLHSLLRHRAILAA 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01869 388 ProSiteProfiles K-box domain profile. 154 240 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst1g01869 388 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Spst1g01869 388 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst1g01869 388 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Spst1g01869 388 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Spst1g01869 388 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 230 - -
Spst1g01869 388 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Spst1g01869 388 Coils Coil 191 211 - -
Spst1g01869 388 CDD MADS_MEF2_like 2 61 IPR033896 GO:0000977|GO:0045944
Spst1g01869 388 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst1g01869 388 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst1g01869 388 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst1g01869 388 Pfam K-box region 157 231 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst1g01869 388 SUPERFAMILY SRF-like 2 63 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01869 Spst-Chr1 26859071 26865666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01869 1 264 MADS-box Gene Family AT5G15800 46.667 3.50e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Spst1g01869 K-box 2.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01869 - - jcu:105644835 282.337