Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01855 ATGGTTTCATTTAGAAGCTCTTTTATTTATAGAAGAACAGAGAACCCTTTCAAAATCTTCAGATTTCATAGCACTTTCTGTTTTTCCTTAGAAGCTACATGCTGGCAAATACACGATGCCTTGAGATACTATCATTATGGGTCAGAATGGGGTAAAAATCAGAAATCGAATCCAAACGAGAAGCCAAACAGGGTGGGGCTTTTCTGGGACTTGGACAATAAACCACCCAACACAATCCCACCTTATGAAGTTGCCAATAAGCTTAGAATAGCTGCATCTTCCTTTGGGATTGTTCGTTATATGGTGGCTTATGCAAATAGCCACACTTTTAGTCATGTTCCTCAATGTATATGGGAGAAAAGGAAAGAGAGGGAACTGTTGTATCGTTTGGAGAACAAGGGTGTCATCAAGCCAAATGAACCTTATCGTTGTCGGGTTTGTGGGAGAAAGTTTTATACTAATGACAAGCTTGTCAACCATTTCAAGCAACTGCATGAGCGTGAGCACGGGAAAAGGATGAACCAGATTGAGTCTGCGAGAGGGAACAGGAGGGTGAAGTTGGTAGCTAAGTATTCTATGAAAATGGAAAAGTATAAAAAGGCTGCAAGTGCTCTTCTCACACCCAAAGTGGGGTATGGTTTGGCGGATGAGCTCAAACGTGCTGGGTTTTGGGTTCGAACTGTGTTGGACAAGTCACAAGCTGCAGATCGAGCATTGCAAAGCCACATGGTGGATGTCATGGACCATAGGCGGGTTGAGTGTGTGGTTCTTGTGTCTGATGATTCTGATTTTGTTGATGTGATAAAGGAAGCAAAGCTGCGATGTCTGAAGACGGTTGTCATTGGGGATATTGATGATGGTGCCTTGAAGAGGACTGCTGATACTGCCTTTTCTTGGGAGGAAATTCTGATGGGGAAGGCTAAAAAACAGGCTATTTCGGTTGTGAAAAACTGGAAGGATCGTGATATTTTAAAGAGGCTAGAGTGGACATATAACCCAGATTGA 1005 0.4269 MVSFRSSFIYRRTENPFKIFRFHSTFCFSLEATCWQIHDALRYYHYGSEWGKNQKSNPNEKPNRVGLFWDLDNKPPNTIPPYEVANKLRIAASSFGIVRYMVAYANSHTFSHVPQCIWEKRKERELLYRLENKGVIKPNEPYRCRVCGRKFYTNDKLVNHFKQLHEREHGKRMNQIESARGNRRVKLVAKYSMKMEKYKKAASALLTPKVGYGLADELKRAGFWVRTVLDKSQAADRALQSHMVDVMDHRRVECVVLVSDDSDFVDVIKEAKLRCLKTVVIGDIDDGALKRTADTAFSWEEILMGKAKKQAISVVKNWKDRDILKRLEWTYNPD 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01855 334 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 52 334 - -
Spst1g01855 334 Pfam NYN domain 214 295 IPR021139 GO:0004540
Spst1g01855 334 ProSitePatterns Zinc finger C2H2 type domain signature. 144 165 IPR013087 -
Spst1g01855 334 Gene3D - 55 303 - -
Spst1g01855 334 SUPERFAMILY beta-beta-alpha zinc fingers 138 168 IPR036236 -
Spst1g01855 334 SMART c2h2final6 142 165 IPR013087 -
Spst1g01855 334 CDD PIN_LabA-like 152 283 - -
Spst1g01855 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 170 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01855 Spst-Chr1 26698555 26699559 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01855 56 333 C2H2 Transcription Factor Family AT4G12240 67.384 3.63e-138 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst1g01855 NYN 2.2e-07 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01855 - - gmx:100789840 581.252