Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01845 ATGACAGACCCCCTGAACTCCAAAACTCTACCTTCACTCATTGTTCTCCGGAAACTCTTTCTTCTCTTTGCGACTCTCGCCTGCACCGCCATTGCCGACGATGCCGCCTTCATGTCCAAGCTCGCCAAAGCCTTGAGTCCCACGCCCACGGGGTGGTCGGGGAGCAGCTTCTGCAGCTGGAAGGGCGTGAGCTGCAGCGCTAACCGCGTCACCTCAATCAACATTGCTTCGCAGTCACTCACCGGAATGCTACCTCGGGACCTGAACACCCTCTCCCAACTCACCTCGCTCTCTCTCCAGGGCAACACGCTCTCCGGCGCATTGCCTTCCCTCGCCAACCTCTCCATGCTGGAAAGCGTCTTCCTCGACGGCAACAACTTCACCTCTATCCCCGAGGGTTGCTTCCAGGGTCTCACTAGCTTACAAAGCCTAAGCATGACAGACAGCATCAACCTCGCTCCATGGACCATTCCCACCGAGTTGACTCAGTCCTCCAATCTCGTCAAACTCGACCTCGGAAACGCAAACCTCGTGGGTACCTTGCCTGATGTGTTTGACTCCTTTGTGAGTTTGCAGGAGCTTCGTCTCTCTTACAACATCCTCACTGGGGGTTTACCAAAGACCTTCGCGGGATCTGCGATTCGGAATCTGTGGCTCAACAATCAGAAGGACGGGTTCGGGTTCTCCGGTACCATTGAGGTGCTTGCATCAATGACCCAATTGTCTCAGGTGTGGCTTCACAAGAACCTGTTCACGGGTCCCATTCCGGATTTGTCAAGTTGCACCGTTTTGTTTGATTTGCAGCTGAAGGACAACCAGTTAACTGGTGCGGTTCCACCTTCTCTGATGTCCCTTTCTAGTTTGCAGAACGTTTCTTTAGAGAACAATGTGCTTCAGGGTCCTGTTCCTTCCTTTGGAAAAGATGTGAAGGTCACTCTAGATGGGATGAATAGTTTTTGTAAGAAAGATCCTGGACCTTGCAATTCTCGCGTCACCACTTTGGTTGATATTGCTAAGCATTTCGGGTATCCTCTTCAGTTGGCGCGTTCCTGGTCCGGGAATGATCCTTGTCGCGATTGGAGTTTCGTTGTGTGCGCTGCGGGGAAGATTATTACGGTGAATTTGGCGAAGCAGAATTTGACGGGAACGATTTCACCTGCATTTGCCAATTTAACTGATTTGAAAAACCTGTATCTCAATGACAACAATTTGGGCGGTTCAATACCGCGAGACTTGGCTAGTTTGACTCAGCTTGAGGTTCTGGATGTGTCTAATAACAACCTATCTGGTTATGTTCCAATTGTCGCAACCCAGGTGAAGTTCAATGTTGGAGGTAATCCTCTGCTTGGGTATCCTGAAGGTGGTGGTGTCAGTGGAACTACTCCGGGTCCGGCAAACGGTTCTGGTGATGCACAAAGTGGAAGTCCAAATGTAGCGTCAGGTGGTTCTTCACACTCTCCTGCTTGGATAGCAGGTATTATTGTTATTGTTGTGTTTTGTGTTGTGGTGGTTGTGCTTATCTTTCGCATTTGCCATATCAAAAACTGGCATGAGAAATTGGGAAAGGTTAATAAACGAGAAAACGGAAACGAATTTGTTCCGAGTTTTGGGGATGAAAGTGTTACCATGTCAATTCAGTTTCTTCGGCAAGTAACAAATAATTTCAATGAAGATAACATTTTAGGTAGTGGAGGATTTGGAGTTGTTTATAAAGGGGAGTTGCATGATGGAAGTAAAGTTGCTGTGAAGAGGATGGAATGTGGTGCGAGGGGAAGTAAGGGACTGAAGGAGTTCCAAGCAGAAATTGCAGTTCTGAGTGAAGTGAGGCACAGGAATTTGGTGGCTTTGTTAGGGCATTGTATCAACGAGCGCGAAAGGGTTTTGGTGTACGAGTATATGCCTCAAGGGACATTAACACAACATCTGTTCTCTTGGCGTGAAAATGGCACTGCTCCATTGACTTGGAAACAAAGGGTAGTTATAGCTTTGGACGTAGCACGAGGAGTGGAATATTTGCACCACCTAGCTCAGCAAAGCTTCGTTCACAGGGACTTAAAACCCTCAAACATATTATTGGGTGATGACATGAGAGCCAAGGTTGCAGATTTTGGTTTGGTTAAAATTATTGCCCCTGGTGGAGAGGATTCTGTCTGGACTCGAGTGGCTGGAACACTTGGATATCTGGAACCTGAATATGCAGGTATAGAAAACCTTTTTCTAGCTAAGTCTTATGTTTTGCAATGA 2244 0.4777 MTDPLNSKTLPSLIVLRKLFLLFATLACTAIADDAAFMSKLAKALSPTPTGWSGSSFCSWKGVSCSANRVTSINIASQSLTGMLPRDLNTLSQLTSLSLQGNTLSGALPSLANLSMLESVFLDGNNFTSIPEGCFQGLTSLQSLSMTDSINLAPWTIPTELTQSSNLVKLDLGNANLVGTLPDVFDSFVSLQELRLSYNILTGGLPKTFAGSAIRNLWLNNQKDGFGFSGTIEVLASMTQLSQVWLHKNLFTGPIPDLSSCTVLFDLQLKDNQLTGAVPPSLMSLSSLQNVSLENNVLQGPVPSFGKDVKVTLDGMNSFCKKDPGPCNSRVTTLVDIAKHFGYPLQLARSWSGNDPCRDWSFVVCAAGKIITVNLAKQNLTGTISPAFANLTDLKNLYLNDNNLGGSIPRDLASLTQLEVLDVSNNNLSGYVPIVATQVKFNVGGNPLLGYPEGGGVSGTTPGPANGSGDAQSGSPNVASGGSSHSPAWIAGIIVIVVFCVVVVVLIFRICHIKNWHEKLGKVNKRENGNEFVPSFGDESVTMSIQFLRQVTNNFNEDNILGSGGFGVVYKGELHDGSKVAVKRMECGARGSKGLKEFQAEIAVLSEVRHRNLVALLGHCINERERVLVYEYMPQGTLTQHLFSWRENGTAPLTWKQRVVIALDVARGVEYLHHLAQQSFVHRDLKPSNILLGDDMRAKVADFGLVKIIAPGGEDSVWTRVAGTLGYLEPEYAGIENLFLAKSYVLQ 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01845 747 Gene3D Ribonuclease Inhibitor 329 451 IPR032675 -
Spst1g01845 747 SMART LRR_typ_2 91 113 IPR003591 -
Spst1g01845 747 SMART LRR_typ_2 415 438 IPR003591 -
Spst1g01845 747 SMART LRR_typ_2 391 414 IPR003591 -
Spst1g01845 747 SMART LRR_typ_2 114 137 IPR003591 -
Spst1g01845 747 SMART LRR_typ_2 188 211 IPR003591 -
Spst1g01845 747 ProSitePatterns Serine/Threonine protein kinases active-site signature. 680 692 IPR008271 GO:0004672|GO:0006468
Spst1g01845 747 ProSitePatterns Protein kinases ATP-binding region signature. 561 583 IPR017441 GO:0005524
Spst1g01845 747 Pfam Leucine Rich Repeat 190 210 IPR001611 GO:0005515
Spst1g01845 747 FunFam Leucine-rich repeat receptor-like kinase 329 452 - -
Spst1g01845 747 Gene3D Phosphorylase Kinase; domain 1 517 632 - -
Spst1g01845 747 Pfam Protein kinase domain 556 732 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01845 747 PANTHER OSJNBA0070M12.3 PROTEIN 19 734 - -
Spst1g01845 747 Gene3D Transferase(Phosphotransferase) domain 1 633 740 - -
Spst1g01845 747 Pfam Leucine rich repeat 373 428 IPR001611 GO:0005515
Spst1g01845 747 Pfam Leucine rich repeat 92 147 IPR001611 GO:0005515
Spst1g01845 747 FunFam Os07g0541700 protein 633 724 - -
Spst1g01845 747 MobiDBLite consensus disorder prediction 453 480 - -
Spst1g01845 747 Gene3D Ribonuclease Inhibitor 33 326 IPR032675 -
Spst1g01845 747 SMART serkin_6 555 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01845 747 FunFam receptor-like protein kinase FERONIA 521 632 - -
Spst1g01845 747 Pfam Leucine rich repeat N-terminal domain 330 365 IPR013210 -
Spst1g01845 747 Pfam Leucine rich repeat N-terminal domain 33 66 IPR013210 -
Spst1g01845 747 SUPERFAMILY Protein kinase-like (PK-like) 534 734 IPR011009 -
Spst1g01845 747 FunFam Receptor-like kinase TMK4 32 325 - -
Spst1g01845 747 MobiDBLite consensus disorder prediction 461 480 - -
Spst1g01845 747 SUPERFAMILY L domain-like 31 433 - -
Spst1g01845 747 ProSiteProfiles Protein kinase domain profile. 555 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01845 Spst-Chr1 26622929 26625172 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01845 70 733 Receptor kinase-like Gene Family AT5G07280 32.017 7.58e-78 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Spst1g01845 Pkinase 6.6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01845 K00924 - gmx:100781851 1048.11