Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01844 ATGATAGGACAGAAAGAAAGTGATGGATGTAAAATGGTATTATTGTTGTTTTTGGTGTTGGCAGCTACTGGAAGAGTGACGACCAAAGTGGATGTGTACGCATTTGGAATAGTTTTGATGGAACTGATTACCGGTAGAAAGACAATAGATAATACTCTGCCGGAACAAATGTCTCACTTGGTTTCATGGTTCCGTAGTAGGATAATACATAACATGGAGAACATCACAGAGGCAATTGATGAAACTCTCAACCTTGAACATGAAAGCATGGAGAGCATATGTGTAGTGGCTGAGTTGGCAGGTCATTGCACTGCTCCTGAACCACACCAAAGGCCCGACATGGGGCATGCAGTCAATGTCTTGGTCCCTCTGGTAGACCAGTGGAGCCCTACTACCCCCACCCATTCTGAAAAAGAACAAGGTTGTGACATTATCTATCAAGACATTTACCACATGTCCATCTCCCAAATTCTATCCGGCCGCTGA 486 0.4403 MIGQKESDGCKMVLLLFLVLAATGRVTTKVDVYAFGIVLMELITGRKTIDNTLPEQMSHLVSWFRSRIIHNMENITEAIDETLNLEHESMESICVVAELAGHCTAPEPHQRPDMGHAVNVLVPLVDQWSPTTPTHSEKEQGCDIIYQDIYHMSISQILSGR 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01844 161 Gene3D Transferase(Phosphotransferase) domain 1 18 148 - -
Spst1g01844 161 Pfam Protein tyrosine and serine/threonine kinase 23 118 IPR001245 GO:0004672|GO:0006468
Spst1g01844 161 PANTHER OSJNBA0070M12.3 PROTEIN 21 158 - -
Spst1g01844 161 SUPERFAMILY Protein kinase-like (PK-like) 23 137 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01844 Spst-Chr1 26622237 26622722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01844 21 121 Receptor kinase-like Gene Family AT5G56890 42.574 6.37e-18 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Spst1g01844 PK_Tyr_Ser-Thr 1.5e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01844 K00924 - gmx:100286794 177.948