Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01837 ATGGAGGGAATAGGGTCAGGGTCAGGGTCAGGTTCAACAGCTCCGGCACCGTTCCTACTGAAGACATACGAGATGGTAGACGATTCATCGACGGAGGAAATTGTATCGTGGAGTTCCACCAACAACACCTTCATAGTCTGGAACCCTGCTGAATTCTCTCGTCTGCTTCTTCCCACTTTTTTCAAGCACAACAACTTCTCCAGCTTCATCCGTCAACTTAATACCTATGGATTTCGAAAAGTGCACCCTGAGCGATGGGAGTTTGCTAATGAGGATTTTGTGAAAGATCAAAAGCATCTTCTAAAAAATATTCACCGCAGGAAGCCTGTCCACAGTCACTCACTCACACAACCTGCTGTGGATTCTGAAAGGTCAGCATTTGAGGAACAAATAGAGAAACTTTCACTCGACAAGACCACCATTCAATCCAATATTTCCCGCTTCAAACAACATCACTCTGCGGCAAAGACTCATCTTGAAGATCTACGCCTGCGATTGGATGGCATGGAGGAGAGGCAGCAAAATTTGATCACCTTCTTTCAAAAGGCTCTTCACAATCCTACTCTTGTTCAGCAAATCACACGCAAAGTCGAGTCCATGGATTTGTTGGCATATAACAAGAAAAGGCGATTACCTCCTCAGGTTGATGACCATGATCATGACCATCACTTGCAGCCTGTTGCAGGAAACACCTTTATTGACAGTTTTGGAATGGAATTTGAACGTATTTCTCATCAAGATTTCTCCAATAAACTCACACTGGAATTGTCACCTGCTCTTTCAGATATGAACTTGGTGGTGTCATGTAGTACACAGAGTTCAAATGAAGATGGAGAAAGTCCACATAGGATGATGCTACCTGAGACATCAGAGCTTGCACAAACTGGAGAATCTTTTACCTTTCAGAGGCATTCCTGTTTATCACAAACCGCCACAGTTGCTGAGAGCCCCAAATATGAAGATGGTGATAGTTATATATCCTGTCTTTTAAATCTAACTCTGGCATCTTCTCCATTACAAGTCAAGAGAAATTCATGCACAGATAGATCCCCATCCCTAATAGACTGTCCCGAATTTGGCAAATTGGAAGGATCAAAATTTTGTGCCAATAATAGTAAAGAATCCGATGTTGGAGCTTCCTCAAGCAGAAATCTAAACGAGGTTACTAATTTAGCTGAGGCTCCCCAAACTGCTCCAGTTAGAGTAAATGATGTGTTCTGGGAACAGTTCCTTACTGAAAGACCGGGCTGTTCAGACAATGAAGGCTCATTGTCCACCCACAAAGCAAATGCATATGTTGCTGAGCAACATGAAGGGCGCTCAGTTCATGGAATCTCTGGAGATGTTATGGACATGGATCAGCTCACACTCTGA 1374 0.4338 MEGIGSGSGSGSTAPAPFLLKTYEMVDDSSTEEIVSWSSTNNTFIVWNPAEFSRLLLPTFFKHNNFSSFIRQLNTYGFRKVHPERWEFANEDFVKDQKHLLKNIHRRKPVHSHSLTQPAVDSERSAFEEQIEKLSLDKTTIQSNISRFKQHHSAAKTHLEDLRLRLDGMEERQQNLITFFQKALHNPTLVQQITRKVESMDLLAYNKKRRLPPQVDDHDHDHHLQPVAGNTFIDSFGMEFERISHQDFSNKLTLELSPALSDMNLVVSCSTQSSNEDGESPHRMMLPETSELAQTGESFTFQRHSCLSQTATVAESPKYEDGDSYISCLLNLTLASSPLQVKRNSCTDRSPSLIDCPEFGKLEGSKFCANNSKESDVGASSSRNLNEVTNLAEAPQTAPVRVNDVFWEQFLTERPGCSDNEGSLSTHKANAYVAEQHEGRSVHGISGDVMDMDQLTL 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01837 457 ProSitePatterns HSF-type DNA-binding domain signature. 57 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst1g01837 457 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst1g01837 457 PRINTS Heat shock factor (HSF) domain signature 56 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst1g01837 457 PRINTS Heat shock factor (HSF) domain signature 18 41 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst1g01837 457 Gene3D - 11 108 IPR036388 -
Spst1g01837 457 FunFam Heat shock transcription factor 1 11 108 - -
Spst1g01837 457 Pfam HSF-type DNA-binding 18 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst1g01837 457 Coils Coil 152 172 - -
Spst1g01837 457 SUPERFAMILY "Winged helix" DNA-binding domain 14 107 IPR036390 -
Spst1g01837 457 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 266 IPR027725 -
Spst1g01837 457 SMART hsfneu3 14 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01837 Spst-Chr1 26557474 26559042 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01837 18 457 HSF AT4G13980 49.142 1.73e-129 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Spst1g01837 HSF_DNA-bind 1.9e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01837 K09419 - gmx:100816484 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01837 1 26557474 26559042 Spst1g01837 1 26557474 26559042 ECH