Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01812 ATGCTAAATTCGTGGGCTGATTTGGCTGCGAATTCCGCGCCCGAGAATGCCGGAACATCCAACTCCACAGCTCCGTCGCGGCCCGTTTATGTGCCTCCCCATCTCAGGAACCGAGCAGCATCAGCATCAGCGTCAGCAGAATCCTCCCCTGCTCCACTACCACCCAATGTGAGTACTAACAATAATAATAATAATGCCGGATCACGGTGGGGTGCGCCCAGAAACGGTTGGGGGAACAGAAACGGTGGTTGGGATCGGCGGGAAGTGAACCCCTTCGGAGATCAGGAGGGCGCAGCGGAAGAAGGAGCAGCAGCGTTTGGCGAGCAGCAGGAAAACACGGGAATTAATTTTGACGCGTACGAGGACATTCCCGTTGAGACGAGCGGTGAAAACGTGCCCCCACCTGTGAATACTTTTGCGGAGATTGACTTGGGCGAGGCTCTTAATCAGAACATTAGACGCTGCAAATATGTGAAGCCAACGCCCGTTCAGCGGCATGCCATACCCATATCCCTTGGCGGACGGGATTTGATGGCTTGTGCACAGACTGGTTCCGGAAAGACTGCAGCATTCTGTTTCCCTATTATCAGTGGCATTATGAGAGGTCAAGGCCAGCCCCTCCAGAGGCCCCCTCGCGGAGTCCGTACTGTCTATCCACTTGCCCTTGTTCTCTCGCCAACTAGGGAGCTATCCATGCAAATACATGACGAGGCTAGGAAGTTTTCATACCAGACAGGGGTTAGGGTCGTTGTTGCCTATGGTGGAGCTCCAATAAACCAGCAGCTACGGGAACTTGAGAGAGGGGTCGATATTCTTGTTGCAACTCCAGGAAGATTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCATTGCAGATGATCAGATATTTGGCGTTAGATGAGGCAGATAGAATGCTGGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTAGAACAAATGGACATGCCTCCACCAGGTGCCAGACAGACTATGTTGTTCAGTGCCACATTTCCGAAGGAGATACAGAGACTAGCCTCTGATTTCCTTTCAAATTATGTTTTTCTGGCTGTTGGAAGAGTGGGCTCAAGTACTGATTTGATTGTCCAAAGAGTTGAGTACGTTCAAGAGTCTGACAAGAGAAGTCACCTAATGGATCTTCTTCATGCGCAGAGGGCAAATGGTGTACAAGGAAAGCAAGCTTTGACCTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCTCTCGAGCACTGGTTGTGTCGTAACAGTTTTCCAGCAACTACTATTCATGGTGACCGGACACAACAGGAAAGAGAATTGGCATTAAGATCATTTAAAACTGGCAACACCCCCATATTGGTTGCAACTGATGTGGCTGCACGTGGTCTTGATATTCCACATGTTGCACATGTGGTGAACTTTGACCTTCCTAATGATATTGATGATTATGTACACCGTATTGGAAGAACAGGGCGAGCAGGAAAGAAAGGCCTTGCAACCGCATTCTTTAATGACAACAATGCTTCCCTAGCTAGGTCTTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTACCTGATTGGCTCTCACGGTACGCAGCTCGCTCTTCTTATGGTGGTGGACGGAATCGTCGATCAGGTGGAAGCCGATTTGGTGGCCGTGACTTTCGAAGAGAAGGTTCTTTTGGTAGAGGTGGTTCTGATTACTATAGTACAGGGAACAGTGGTGGGTATGGCAGTTCTGGTGGGTATGGTGGAGGATATGGTCCTGGGGTAACCAGTGCATGGGACTGA 1794 0.4928 MLNSWADLAANSAPENAGTSNSTAPSRPVYVPPHLRNRAASASASAESSPAPLPPNVSTNNNNNNAGSRWGAPRNGWGNRNGGWDRREVNPFGDQEGAAEEGAAAFGEQQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMRGQGQPLQRPPRGVRTVYPLALVLSPTRELSMQIHDEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPKEIQRLASDFLSNYVFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCRNSFPATTIHGDRTQQERELALRSFKTGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARSLADLMQEANQEVPDWLSRYAARSSYGGGRNRRSGGSRFGGRDFRREGSFGRGGSDYYSTGNSGGYGSSGGYGGGYGPGVTSAWD 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01812 597 Gene3D - 95 357 IPR027417 -
Spst1g01812 597 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 98 533 - -
Spst1g01812 597 Pfam DEAD/DEAH box helicase 161 344 IPR011545 GO:0003676|GO:0005524
Spst1g01812 597 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 137 165 IPR014014 GO:0003724
Spst1g01812 597 SMART ultradead3 156 370 IPR014001 -
Spst1g01812 597 SMART helicmild6 413 494 IPR001650 -
Spst1g01812 597 Gene3D - 358 538 IPR027417 -
Spst1g01812 597 MobiDBLite consensus disorder prediction 1 27 - -
Spst1g01812 597 MobiDBLite consensus disorder prediction 574 597 - -
Spst1g01812 597 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 168 355 IPR014001 -
Spst1g01812 597 MobiDBLite consensus disorder prediction 1 103 - -
Spst1g01812 597 CDD SF2_C_DEAD 367 503 - -
Spst1g01812 597 Pfam Helicase conserved C-terminal domain 379 494 IPR001650 -
Spst1g01812 597 CDD DEADc_DDX3_DDX4 138 361 IPR044763 GO:0003724|GO:0005524
Spst1g01812 597 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 366 533 IPR001650 -
Spst1g01812 597 FunFam ATP-dependent RNA helicase RhlB 358 537 - -
Spst1g01812 597 FunFam Probable ATP-dependent RNA helicase DDX4 100 357 - -
Spst1g01812 597 MobiDBLite consensus disorder prediction 41 70 - -
Spst1g01812 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 220 510 IPR027417 -
Spst1g01812 597 MobiDBLite consensus disorder prediction 536 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01812 Spst-Chr1 26332729 26337757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01812 135 526 Eukaryotic Initiation Factors Gene Family AT3G19760 31.807 2.32e-62 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01812 K11594 - gmx:100784557 943.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01812 1 26332729 26337757 Spst1g01812 1 26332729 26337757 ECH