Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst1g01812 | ATGCTAAATTCGTGGGCTGATTTGGCTGCGAATTCCGCGCCCGAGAATGCCGGAACATCCAACTCCACAGCTCCGTCGCGGCCCGTTTATGTGCCTCCCCATCTCAGGAACCGAGCAGCATCAGCATCAGCGTCAGCAGAATCCTCCCCTGCTCCACTACCACCCAATGTGAGTACTAACAATAATAATAATAATGCCGGATCACGGTGGGGTGCGCCCAGAAACGGTTGGGGGAACAGAAACGGTGGTTGGGATCGGCGGGAAGTGAACCCCTTCGGAGATCAGGAGGGCGCAGCGGAAGAAGGAGCAGCAGCGTTTGGCGAGCAGCAGGAAAACACGGGAATTAATTTTGACGCGTACGAGGACATTCCCGTTGAGACGAGCGGTGAAAACGTGCCCCCACCTGTGAATACTTTTGCGGAGATTGACTTGGGCGAGGCTCTTAATCAGAACATTAGACGCTGCAAATATGTGAAGCCAACGCCCGTTCAGCGGCATGCCATACCCATATCCCTTGGCGGACGGGATTTGATGGCTTGTGCACAGACTGGTTCCGGAAAGACTGCAGCATTCTGTTTCCCTATTATCAGTGGCATTATGAGAGGTCAAGGCCAGCCCCTCCAGAGGCCCCCTCGCGGAGTCCGTACTGTCTATCCACTTGCCCTTGTTCTCTCGCCAACTAGGGAGCTATCCATGCAAATACATGACGAGGCTAGGAAGTTTTCATACCAGACAGGGGTTAGGGTCGTTGTTGCCTATGGTGGAGCTCCAATAAACCAGCAGCTACGGGAACTTGAGAGAGGGGTCGATATTCTTGTTGCAACTCCAGGAAGATTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCATTGCAGATGATCAGATATTTGGCGTTAGATGAGGCAGATAGAATGCTGGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTAGAACAAATGGACATGCCTCCACCAGGTGCCAGACAGACTATGTTGTTCAGTGCCACATTTCCGAAGGAGATACAGAGACTAGCCTCTGATTTCCTTTCAAATTATGTTTTTCTGGCTGTTGGAAGAGTGGGCTCAAGTACTGATTTGATTGTCCAAAGAGTTGAGTACGTTCAAGAGTCTGACAAGAGAAGTCACCTAATGGATCTTCTTCATGCGCAGAGGGCAAATGGTGTACAAGGAAAGCAAGCTTTGACCTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCTCTCGAGCACTGGTTGTGTCGTAACAGTTTTCCAGCAACTACTATTCATGGTGACCGGACACAACAGGAAAGAGAATTGGCATTAAGATCATTTAAAACTGGCAACACCCCCATATTGGTTGCAACTGATGTGGCTGCACGTGGTCTTGATATTCCACATGTTGCACATGTGGTGAACTTTGACCTTCCTAATGATATTGATGATTATGTACACCGTATTGGAAGAACAGGGCGAGCAGGAAAGAAAGGCCTTGCAACCGCATTCTTTAATGACAACAATGCTTCCCTAGCTAGGTCTTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTACCTGATTGGCTCTCACGGTACGCAGCTCGCTCTTCTTATGGTGGTGGACGGAATCGTCGATCAGGTGGAAGCCGATTTGGTGGCCGTGACTTTCGAAGAGAAGGTTCTTTTGGTAGAGGTGGTTCTGATTACTATAGTACAGGGAACAGTGGTGGGTATGGCAGTTCTGGTGGGTATGGTGGAGGATATGGTCCTGGGGTAACCAGTGCATGGGACTGA | 1794 | 0.4928 | MLNSWADLAANSAPENAGTSNSTAPSRPVYVPPHLRNRAASASASAESSPAPLPPNVSTNNNNNNAGSRWGAPRNGWGNRNGGWDRREVNPFGDQEGAAEEGAAAFGEQQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMRGQGQPLQRPPRGVRTVYPLALVLSPTRELSMQIHDEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPKEIQRLASDFLSNYVFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCRNSFPATTIHGDRTQQERELALRSFKTGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARSLADLMQEANQEVPDWLSRYAARSSYGGGRNRRSGGSRFGGRDFRREGSFGRGGSDYYSTGNSGGYGSSGGYGGGYGPGVTSAWD | 597 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst1g01812 | 597 | Gene3D | - | 95 | 357 | IPR027417 | - | |
Spst1g01812 | 597 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 98 | 533 | - | - | |
Spst1g01812 | 597 | Pfam | DEAD/DEAH box helicase | 161 | 344 | IPR011545 | GO:0003676|GO:0005524 | |
Spst1g01812 | 597 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 137 | 165 | IPR014014 | GO:0003724 | |
Spst1g01812 | 597 | SMART | ultradead3 | 156 | 370 | IPR014001 | - | |
Spst1g01812 | 597 | SMART | helicmild6 | 413 | 494 | IPR001650 | - | |
Spst1g01812 | 597 | Gene3D | - | 358 | 538 | IPR027417 | - | |
Spst1g01812 | 597 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Spst1g01812 | 597 | MobiDBLite | consensus disorder prediction | 574 | 597 | - | - | |
Spst1g01812 | 597 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 168 | 355 | IPR014001 | - | |
Spst1g01812 | 597 | MobiDBLite | consensus disorder prediction | 1 | 103 | - | - | |
Spst1g01812 | 597 | CDD | SF2_C_DEAD | 367 | 503 | - | - | |
Spst1g01812 | 597 | Pfam | Helicase conserved C-terminal domain | 379 | 494 | IPR001650 | - | |
Spst1g01812 | 597 | CDD | DEADc_DDX3_DDX4 | 138 | 361 | IPR044763 | GO:0003724|GO:0005524 | |
Spst1g01812 | 597 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 366 | 533 | IPR001650 | - | |
Spst1g01812 | 597 | FunFam | ATP-dependent RNA helicase RhlB | 358 | 537 | - | - | |
Spst1g01812 | 597 | FunFam | Probable ATP-dependent RNA helicase DDX4 | 100 | 357 | - | - | |
Spst1g01812 | 597 | MobiDBLite | consensus disorder prediction | 41 | 70 | - | - | |
Spst1g01812 | 597 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 220 | 510 | IPR027417 | - | |
Spst1g01812 | 597 | MobiDBLite | consensus disorder prediction | 536 | 559 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst1g01812 | Spst-Chr1 | 26332729 | 26337757 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst1g01812 | 135 | 526 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 31.807 | 2.32e-62 | 209 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst1g01812 | K11594 | - | gmx:100784557 | 943.725 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst1g01812 | 1 | 26332729 | 26337757 | Spst1g01812 | 1 | 26332729 | 26337757 | ECH |