Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01809 ATGGGAGAAATAGAAAGAGAGAGTGTGTTGCCAAGGGAGAAGGAAGAAGAGGAAGCGTCGGTGGATATGTGGAAGTACATATTTGGATTTGTGGAACTGGGAGTGGTGAAATGTGCGATAGAGCTAGGGATTGCTGAAGCCATAGAAAAGCATGGAGGTCCGATGAGCGTGTCGGAGATATCATCAACCCTAGGGTGTGACCCTTGGCTTCTTAGGCGCATAATGAGGTTCCTGGCACACAGAAAGATATTCAAAGCCATACCCATGGGCAGCAGCAACGGGTATTCTCAAACACCTCTGTCTCGGCGTTTGATGAGAGAGGGTGAACATAGCATGGCTGCTTTTATTTTGCTGGAGAGTAGTCCTGTAATGCTCGCACCTTGGCACAGTCTAAGCGCTCGCGTCTTGGCCAATGGCCATCCCTCATTTCAAAAGGCTCATGGTGAGGACGTGTGGCGCTATGCTGCGACAAATCTTGACCACAGCAACCTCATCAATGAAGCAATGGCATGCGATGCTAAGCTTGTTATGCCTGTCATCATTGAAACTTGCAGCGAGGCATTTGATGGTCTCAAGTCCTTGGTGGATGTGGGTGGGGGCAATGGCACCTCCATGCGCATCGTCCTTCAGGCTTGCCCTTCCATTCGACCCATCAATTTCGATCTTCCTCATGTCATTTCCCAGGCCCCTCACTCGGATGGCCTCCAACACGTCCCGGGCGACATGTTTCAAAGTGTTCCTAAAGCTGATGCTGCTTTTCTCAAGTGGGTTTTGCACGATTGGTCAGACGAAGAGTGCATCCAAATCTTAAAGAATTGTAGGGCAGTGATCTCAAAGGAAAATGGAAGGGTTATTATCGTGGAGGCGGTGATTGAAGAAGAAGAAGTACAAGAAGGGAAGCCGAAGGTACTGAACGACGTAGGATTGATGCTGGACATGGTAATGATGGCGCACACTAACTTTGGGAAAGAGAGGACCCGAAAGGAGTGGGAATATGTGATAAAAATGGCAGGATTTAGCTCATACACTGTCAAATCCATTCATGCTGTACAGTCTGTCATTTTGGCTTTCTACTAA 1077 0.4828 MGEIERESVLPREKEEEEASVDMWKYIFGFVELGVVKCAIELGIAEAIEKHGGPMSVSEISSTLGCDPWLLRRIMRFLAHRKIFKAIPMGSSNGYSQTPLSRRLMREGEHSMAAFILLESSPVMLAPWHSLSARVLANGHPSFQKAHGEDVWRYAATNLDHSNLINEAMACDAKLVMPVIIETCSEAFDGLKSLVDVGGGNGTSMRIVLQACPSIRPINFDLPHVISQAPHSDGLQHVPGDMFQSVPKADAAFLKWVLHDWSDEECIQILKNCRAVISKENGRVIIVEAVIEEEEVQEGKPKVLNDVGLMLDMVMMAHTNFGKERTRKEWEYVIKMAGFSSYTVKSIHAVQSVILAFY 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01809 358 Gene3D - 10 104 IPR036388 -
Spst1g01809 358 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 24 358 IPR016461 GO:0008168
Spst1g01809 358 SUPERFAMILY "Winged helix" DNA-binding domain 13 107 IPR036390 -
Spst1g01809 358 Pfam O-methyltransferase domain 128 340 IPR001077 GO:0008171
Spst1g01809 358 FunFam O-methyltransferase family protein 7 104 - -
Spst1g01809 358 PIRSF O-mtase 2 358 IPR016461 GO:0008168
Spst1g01809 358 PANTHER O-METHYLTRANSFERASE 35 341 IPR016461 GO:0008168
Spst1g01809 358 FunFam O-methyltransferase family protein 106 357 - -
Spst1g01809 358 Gene3D Vaccinia Virus protein VP39 106 357 IPR029063 -
Spst1g01809 358 Pfam Dimerisation domain 35 79 IPR012967 GO:0046983
Spst1g01809 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 109 355 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01809 Spst-Chr1 26290270 26291420 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01809 1 344 Monolignol Biosynthesis Gene Families AT5G54160 36.158 6.40e-69 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01809 K22588 - gmx:100782951 541.962