Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01807 ATGGCAGAAGAGGCGGAGGGAGGAGTCCCAGCCCTAGAGGCCGCTACCCTCCCCGTCCCAGGCAACAAGATCTCCCTACCAGCCTTCTTGTCCGTAACCTTCGCCACGACTGCAGGCGCGCCCGAGGATCTTCGCAGACCTTTTGGTCAATTCGGTCCTCTCAAAGACATTTACCTGCCTAAGGATTACTACACTGGAGAACCTCGTGGTTTTGGTTTTGTCCAATACGTGGATCCTGCTGATGCAGCTGATGCTAAATATCATATGGATGGTCAAATTCTTCTTGGTCGGGAGCTCACTGTTGTATTTGCTGAGGAGAATAGAAAGAAGCCAAATGAGATGAGGTCAAGAGAGAGAAGGGGTCGGTTCTATGATCGTAGGAGGTCTCCTCCTCGTTACTCTCGTTCTCCCCGCTATTCTCGATCTCCACCACCACGCCATAGATCTCGTTCTCGCAGTCGTGACTATTATTCCCCTCCTCCTAAACGAAGGGACTATTCTAGATCTGCCTCTCCTGAGGATAGAGGGTACAGTCGAGAAAGATCCTATTCGCAGCATAGTAGGGAGAGGTCATACTCACGCACTCCACCTTATAATGGGGGCTCCAGGAGCCGAAGTAAGAGTCCTGCAAAGGGCCCAGGTCGGAGCAGAAGTCCAAGTCCGGACCGTGATGTTAGGGAACCAGCCCGTGGTAGGTCCCCCAGTCAGTGA 711 0.5274 MAEEAEGGVPALEAATLPVPGNKISLPAFLSVTFATTAGAPEDLRRPFGQFGPLKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPNEMRSRERRGRFYDRRRSPPRYSRSPRYSRSPPPRHRSRSRSRDYYSPPPKRRDYSRSASPEDRGYSRERSYSQHSRERSYSRTPPYNGGSRSRSKSPAKGPGRSRSPSPDRDVREPARGRSPSQ 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01807 236 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 99 IPR000504 GO:0003723
Spst1g01807 236 SUPERFAMILY RNA-binding domain, RBD 42 133 IPR035979 GO:0003676
Spst1g01807 236 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 42 216 - -
Spst1g01807 236 MobiDBLite consensus disorder prediction 109 236 - -
Spst1g01807 236 MobiDBLite consensus disorder prediction 189 213 - -
Spst1g01807 236 MobiDBLite consensus disorder prediction 149 188 - -
Spst1g01807 236 SMART rrm1_1 29 102 IPR000504 GO:0003723
Spst1g01807 236 Gene3D - 32 141 IPR012677 -
Spst1g01807 236 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 106 IPR000504 GO:0003723
Spst1g01807 236 MobiDBLite consensus disorder prediction 109 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01807 Spst-Chr1 26276552 26279113 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01807 30 137 Eukaryotic Initiation Factors Gene Family AT2G36660 30.556 1.54e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01807 K12900 - gmx:100775883 259.225