Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01791 ATGGAGGAAACGTCTGCAGCAAGGTATTGGTGTCACATGTGCTCTCAAATGGTCAATCCTATCATGGATGTGGAAATCAAATGCCCCTTTTGCCAAAGTGGTTTTGTTGAAGAAATGAGTAACGCTCCTGGTAGCATCGACATTGACAATATGTCACAAGCTGATTTCGAATCTGATCGGGCTCTCTCCCTTTGGGCACCCATCTTGCTAGGCATGATGGGCAATCCACGTCGCCGTCGAAGGCTTAGGCAAATAGAGAATGATAATGACAATGATAGTGGTAATCGTGATGATGTGGATGGTGTAGTAAACCATGGTGGAGAACCTGAATATGATCAAGAGCTCGAGTCCATCCTTCGAAGGAGAAGAAGAAACTCAACTACTATTCTGCAATTGCTCGAAGGTATAAGAGCTGGGCTGGCTTCTGAATCATATGAAAATACCGATGGCGATGACCATGACAGGGAAAGAGAAAGAGAAAGAGAAAGAGAGCGTGTGATTCTGATCAATCCTTTAAATCAGACTATTATTGTTCAAGGTTCCTATGAGTCAAACCGGGATCAAAGTGATAATCATAGCCACGTTGGTTCCCTGGGTGATTATTTCATAGGGCCTGGTTTGGACATATTGTTGCAACATTTGGCTGAGAACGATCCCAATAGGTATGGAACCCCACCTGCTAAGAAGGAGGCCATTGAAGCACTGCCTACCGTGACAATCAATGAGAATTTGCAGTGTTCTGTGTGTCTGGACGATTTTGAAGTTGGTTCTGAAGCTAAAGAGATGCCTTGTAAACATAGGTTTCATAGCGGGTGTATCCTTCCATGGTTGGAGCTTCATAGTTCTTGTCCTGTTTGCAGGCTTCAGTTGCCAGTTGATGAATCTAAGCAAGACTCTGATGGGTCAAGGACTAGCAGAACCCGAATGGAGGAAGAAAATATTGAACATGACAATTCTGAAGAAAGAGACGGTGAAAGGAGAAATGCAAGTAGGGGTAGAAGATTCTCATTTCCATGGCCTTTCAATGGATTATTTTCTTCATCGAACTCTTCATCCTCTTTCAGATCTAATGAAAACGGAAATGATACTATATCAAATGAAAATGAAAACTGA 1113 0.4277 MEETSAARYWCHMCSQMVNPIMDVEIKCPFCQSGFVEEMSNAPGSIDIDNMSQADFESDRALSLWAPILLGMMGNPRRRRRLRQIENDNDNDSGNRDDVDGVVNHGGEPEYDQELESILRRRRRNSTTILQLLEGIRAGLASESYENTDGDDHDRERERERERERVILINPLNQTIIVQGSYESNRDQSDNHSHVGSLGDYFIGPGLDILLQHLAENDPNRYGTPPAKKEAIEALPTVTINENLQCSVCLDDFEVGSEAKEMPCKHRFHSGCILPWLELHSSCPVCRLQLPVDESKQDSDGSRTSRTRMEEENIEHDNSEERDGERRNASRGRRFSFPWPFNGLFSSSNSSSSFRSNENGNDTISNENEN 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01791 370 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Spst1g01791 370 CDD RING-H2_RNF126-like 245 287 - -
Spst1g01791 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 213 293 IPR013083 -
Spst1g01791 370 MobiDBLite consensus disorder prediction 294 370 - -
Spst1g01791 370 MobiDBLite consensus disorder prediction 341 370 - -
Spst1g01791 370 FunFam E3 ubiquitin-protein ligase RING1-like 213 293 - -
Spst1g01791 370 SMART ring_2 246 286 IPR001841 -
Spst1g01791 370 SUPERFAMILY RING/U-box 235 294 - -
Spst1g01791 370 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 150 291 - -
Spst1g01791 370 MobiDBLite consensus disorder prediction 85 109 - -
Spst1g01791 370 Pfam Ring finger domain 245 287 IPR001841 -
Spst1g01791 370 ProSiteProfiles Zinc finger RING-type profile. 246 287 IPR001841 -
Spst1g01791 370 MobiDBLite consensus disorder prediction 294 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01791 Spst-Chr1 25447607 25448719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01791 108 293 C3H Transcription Factor Family AT1G26800 37.234 3.47e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01791 - K11982 gmx:100784876 547.354