Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01746 ATGGCGTCATCTTTGGAGGAGCTTCTAAAAGAGGAGGGGTTCAAGGGAATCAGAAGAGTGACAAGGTCTAGATCCTCGGTCCAATATGGTGCTTCAAGTGAGCCTCTTTACTCTTTGGACGGGAGACTTTCTGTATCAAGTGAAAGAATTCGAGCTCAGAGAAAAAGGTCTGATGCCTCACGATCAAGGGATAATGTTTTTTTGAGAGACAAAGTGGATGAACGGTTGTACAATGAAGCTGAGAAGAACTCTTCTAGCTATATTGATTCAAGTAAAGGAGTTGAATCCAATACGACAGAATACATGCTAAGGCATGAGATTACTGAGGTGATTGAGCAAGAAGCTAGCAGAGTTGAAAATACTTACTCAAAAGAAGTGTCTACAAAAGAAAAGAATTTCAATGAACTTTTGGAAGACAGAAAATGGGAGGAAAAGCCTGTCAAGGATGCGAAGGAGCAAAGCAGAACTTCCAGTATAAATATGCTTAGACACTCGAGCGAAACTGGAAAGAATATAAATCCCCAGAAGGACTCGTACACTAGATATAACAGCAAGAGCTTTGAGTATAGCAGCAGGAATAAAAAAAGCAATCTGGCTGTGCAAGCAGCTTCTAGTCTTGCTCTTGATGAAGTAGCTGTCCAAGCAGTAGTTTCCATTCTAAATGGATATATAATGCGTTTTCCAAAAGATGAGGATTTTCGGTCTATATTGCACCACAGATGTTTCTCCTCCTTGAATTTTCTTGGACTGAAAGAAGAGAAAATTACTGAGACCAAAGTCATAAGAAGTCTTGAGCAAGCAATTGAGGCCATTGAACAATCTGTGGAGGAACCTGTATCTGCCATGTATCTGAAAAGAACAACGATGCAGCTTAGCATTATTACAGGTTTGAGTTTGAATGATTTGAAATACGCGTGTACACGTGGGATCCCGAATTACAAGTTGTCAGCCTGTGCTCATCTTTACCTCAGTGTGGTATATATGATGCAGAAAAAAAATAAGGTGTCAGCAAAGCATCTCTTGCAAGTGTTTTGTGAATCACCTTTTCAGGCACGGACAATATTGTTGCCTGAACTGTGGGAGCATCTATTTTCTCCACAACTTTCTCATTTGAAGGCATGGTACTTGAAGGAAGCAAGCGTTTTAGTAGATACACCAAACAAAGCAAGAGGGCTAAAACTTCTTCAAAAAGTGTACAATGAGCATTTGGATTCGGGAACTCATATATTTGCTGTATACTACAAAGATTGGCTTACTGAAGGAGTGGAATCCCCAGCAATTCCTTCAATTGGCATTCCATCAATTTCTGTCACAGGAAGTCAACAGGGAAGTTCACTTGGTCATTCTTTTGAGTCTGCTAGCTCCATTGACCCATTCTCACCACAGCCAATGGTCAGCAAGAAACTGTATGATTCTATGTTTGGTAGCCTGAGTAGACCTGTAGTTTACCAAGTCAAAGATGTTATGGATGATGGTAACCAAGGCAACTGCGTGATAGACTCTTATGGTTCAACATTTGTTAAACAGACATTAACATATGAGTCTGAAACTGTTAAACTTACAGATCAAGATGTTGAAGGTTTCTCTCAAGGTGTAGCCATTGATACAATCAAGAATCTCAAAGGAAATTCAGTGATAGCTGCAGAAGAATGGCAGGAAAGGAATCTCAGTGATGACATTAATAACTCTTTCTCTAAGCAAACTAATTTAAACAGTCACATTACTGATGCCCTACCACATGAAAAAGCAAATGAACTTGATCTCAAAAAGCCAAATAAGTCAAGTTCTTCTCTTCAAGGATCATATTTTCCAAGCACTCCAGAGGAGTTTATTTGTTCTCTTACTGGAAATCTCTTTGAGGAACCAGTCACCCTAGAGACAGGTCAAACCTTTGAGAGAAAGGCCATCAAAGCATGGTTTGAAGAGGGAAACAGAACGTGCCCGGTAACAGGAAATGCTTTGGAATGCGTGACCATGCCGTTTACCAACCTTATCTTGAAGCGTCTGATTGATAATTGGAAGTCAGAATGTTTTGATTACCTTCTTGATCTTGCTTCCCAAAGAGTGGAGAAATCAGAGGAGCTTAAGTTGAAAAAGTGGGATGAGACTGCTGTATTCAAGTTAGAGAGGCTTTTCTCCTCTTTGAAAGAAGAGGAGAAATCAACTTATGCTAAGCATCTCATCTCTTTAGGAGTTCTTCCATTTCTTTTTAAGAGGTTTGAACAAGGAAATGTGGAAGAAAAATCACAAGTGATTTCTCTCTTGCTCAATTGTATTCAAGTAGACTCTGGTTGCATATATACGATAGCAAGGAGTGTTAACAGAAAATGTCTTCTCGATCTTCTTCACAGCAAGGAGGTTACCCCAACAACTAATGCAATACTATTCCTTACTGAACTTTTATCAATGAAAAGGTGA 2418 0.3954 MASSLEELLKEEGFKGIRRVTRSRSSVQYGASSEPLYSLDGRLSVSSERIRAQRKRSDASRSRDNVFLRDKVDERLYNEAEKNSSSYIDSSKGVESNTTEYMLRHEITEVIEQEASRVENTYSKEVSTKEKNFNELLEDRKWEEKPVKDAKEQSRTSSINMLRHSSETGKNINPQKDSYTRYNSKSFEYSSRNKKSNLAVQAASSLALDEVAVQAVVSILNGYIMRFPKDEDFRSILHHRCFSSLNFLGLKEEKITETKVIRSLEQAIEAIEQSVEEPVSAMYLKRTTMQLSIITGLSLNDLKYACTRGIPNYKLSACAHLYLSVVYMMQKKNKVSAKHLLQVFCESPFQARTILLPELWEHLFSPQLSHLKAWYLKEASVLVDTPNKARGLKLLQKVYNEHLDSGTHIFAVYYKDWLTEGVESPAIPSIGIPSISVTGSQQGSSLGHSFESASSIDPFSPQPMVSKKLYDSMFGSLSRPVVYQVKDVMDDGNQGNCVIDSYGSTFVKQTLTYESETVKLTDQDVEGFSQGVAIDTIKNLKGNSVIAAEEWQERNLSDDINNSFSKQTNLNSHITDALPHEKANELDLKKPNKSSSSLQGSYFPSTPEEFICSLTGNLFEEPVTLETGQTFERKAIKAWFEEGNRTCPVTGNALECVTMPFTNLILKRLIDNWKSECFDYLLDLASQRVEKSEELKLKKWDETAVFKLERLFSSLKEEEKSTYAKHLISLGVLPFLFKRFEQGNVEEKSQVISLLLNCIQVDSGCIYTIARSVNRKCLLDLLHSKEVTPTTNAILFLTELLSMKR 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01746 805 MobiDBLite consensus disorder prediction 144 179 - -
Spst1g01746 805 MobiDBLite consensus disorder prediction 582 603 - -
Spst1g01746 805 ProSiteProfiles U-box domain profile. 605 680 IPR003613 GO:0004842|GO:0016567
Spst1g01746 805 Pfam U-box domain 607 676 IPR003613 GO:0004842|GO:0016567
Spst1g01746 805 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 605 679 IPR013083 -
Spst1g01746 805 SMART Ubox_2 609 673 IPR003613 GO:0004842|GO:0016567
Spst1g01746 805 PANTHER OS04G0584500 PROTEIN 1 597 - -
Spst1g01746 805 MobiDBLite consensus disorder prediction 153 179 - -
Spst1g01746 805 CDD RING-Ubox_PUB 607 655 IPR045210 -
Spst1g01746 805 SUPERFAMILY RING/U-box 600 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01746 Spst-Chr1 21631340 21634456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01746 589 673 U-box Gene Family AT1G29340 40.230 1.91e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01746 - - gmx:100820501 1213.36