Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01735 ATGAATTCTAGGGGATCCTTGACTCCACTCAAATCAATTCTTTCTGTTACAATTGGAATTGCAGGAGCAGACAAGTTACGGTCCAGAAGTAATGGAGGTTCCAAAAGGGAATTGCCTCCTCCCAACACCAAGGAAGGACATGGACCCGCCGTTCAAATTGCTGCTCAAACTTTTACTTTCCGTGAACTTGCAGCTGCAACAAAAAACTTTAGGCCAGACTCCTTTGTAGGGGAAGGTGGTTTCGGAAGGGTCTACAAAGGCAGGCTTGAAACCACTGGTCAGATTGTTGCAGTCAAACAGTTAGACAAAAATGGTCTCCAGGGTAATAGGGAATTCCTTGTAGAAGTTCTCATGCTCAGTCTTCTGCATCACCCTAACCTTGTGAATCTGATTGGATACTGTGCGGATGGGGAACAACGCCTCCTTGTTTATGAATTTATGCCTTTGGGATCATTGGAAGATCACCTTCATGACCTTCCCCCTGATAAGGAGCCACTAGATTGGAACACTAGAATGAAAATAGCTGCTGGTGCTGCAAAAGGATTAGAGTACCTGCATGACAAGGCAAATCCACCTGTCATTTACAGAGACTTCAAGTCATCTAACATATTACTTGATGAAGGGTACCGCCCTAAGCTTTCTGACTTCGGTCTTGCGAAGCTTGGTCCTGTTGGTGACAAATCACACGTTTCTACCCGAGTCATGGGAACTTATGGTTACTGCGCTCCTGAGTATGCTATGACTGGACAGCTGACTGTGAAGTCTGATGTATATAGCTTTGGGGTTGTCTTCTTAGAGCTTATTACTGGACGCAAAGCAATTGACAGCACCCAGCCCCATGGAGAACAGAATCTTGTCACATGGGTTTTGCTCTATTCTCTCCTTGTCATTGTAGTTAGTTCAGCATGCATAAGCTCTTGTAAATTAAAATGGAGATGTGATTGTGGTTTTTTATGTATGTTTGTGCAGGCACGTCCACTTTTTAACGACCGCAGGAAGTTTTCAAAGTTGGCTGATCCCAGGCTGCAGGGACGGTTTCCCATGCGGGGTCTTTACCAGGCGCTAGCTGTGGCATCGATGTGCATCCAAGAATCGGCTGCCACACGCCCTCTGATTGGAGATGTGGTGACAGCCCTCTCTTATCTGGCAAACCAGGCATATGACCCCAACAATGGTGGGCATGGTTATAGGGGGTCAAGTGATGATAAAAGGAACAGAGATGATAAAGGTGGAAGAATACTGAAAAATGATGAAGCTGGGGGATCTGGACGCAGATGGGACTTGGAAGGATCCGAGAAAGATGACTCCCCACGAGAAACTGCAAGAATGTTAAACAGAGATCTAGATAGAGAACGTGCTGTGGCTGAAGCCAAGATGTGGGGAGAGAACTTGAGACAGAAAAGACAACAAAGTTTGCAGCAGAGCAGTTATGTTTCTAACTAA 1443 0.4567 MNSRGSLTPLKSILSVTIGIAGADKLRSRSNGGSKRELPPPNTKEGHGPAVQIAAQTFTFRELAAATKNFRPDSFVGEGGFGRVYKGRLETTGQIVAVKQLDKNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGEQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDFKSSNILLDEGYRPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSTQPHGEQNLVTWVLLYSLLVIVVSSACISSCKLKWRCDCGFLCMFVQARPLFNDRRKFSKLADPRLQGRFPMRGLYQALAVASMCIQESAATRPLIGDVVTALSYLANQAYDPNNGGHGYRGSSDDKRNRDDKGGRILKNDEAGGSGRRWDLEGSEKDDSPRETARMLNRDLDRERAVAEAKMWGENLRQKRQQSLQQSSYVSN 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01735 480 MobiDBLite consensus disorder prediction 25 48 - -
Spst1g01735 480 Pfam Protein kinase domain 74 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01735 480 Gene3D Transferase(Phosphotransferase) domain 1 147 392 - -
Spst1g01735 480 SUPERFAMILY Protein kinase-like (PK-like) 56 384 IPR011009 -
Spst1g01735 480 FunFam Serine/threonine-protein kinase PBS1 43 146 - -
Spst1g01735 480 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Spst1g01735 480 FunFam Serine/threonine-protein kinase PBS1 147 294 - -
Spst1g01735 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Spst1g01735 480 CDD STKc_IRAK 76 379 - -
Spst1g01735 480 ProSiteProfiles Protein kinase domain profile. 70 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01735 480 MobiDBLite consensus disorder prediction 397 448 - -
Spst1g01735 480 Gene3D Phosphorylase Kinase; domain 1 54 146 - -
Spst1g01735 480 MobiDBLite consensus disorder prediction 392 448 - -
Spst1g01735 480 PANTHER OS07G0668900 PROTEIN 48 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01735 Spst-Chr1 21528235 21532848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01735 42 382 Glycoside Hydrolase AT3G07070 65.396 3.34e-158 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Spst1g01735 Pkinase 4.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01735 K13430 - gmx:100305422 752.666