Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01732 ATGGAGAAAGTGAATTTTGTGAAGAATGGGGAGCTTAGATTGCCTCCCGGGTTCCGTTTCCACCCAACTGACGAGGAATTGGTTGTGCAATACTTAAAGCGTAAGGTCTACTCCTGCCCTTTGCCAGCCTCCATCATTCCTGAGGTTGATGTTTGCAAGTCTGATCCTTGGGATTTGCCAGGTGATTTGGAGCAAGAGAGGTACTTCTTCAGCACCAAAGAGGCCAAATATCCCAACGGCAACCGCTCCAACAGAGCCACCAATTCAGGTTATTGGAAGGCCACTGGGTTGGACAAACAAATTGTAGCTTCAAAAGGGAACCAAGTTGTGGGGATGAAAAAGACGCTTGTTTTCTACAGAGGAAAGCCACCTCATGGATTCAGAACTGATTGGATCATGCATGAATACCGCCTCCTCAACTCACCCACCTCCTCTCAGTCTCAGAGGCCGAGGCAGAGCCCTGTGGTTGAAGTTGCCATGGAAAATTGGGTTCTGTGTCGCATATTTTTGAAGAGGAGGAGTGGTGGTAGAAACGGGGAGGAGAAGGAGATAGAGAGTTTGAGAGGCAGAGTGGATAACAGAAAGGTGAGGAAGTCGAGGGTGGTTTTCTATGACTTCTTGGCGCAGAACAAGACTGATTCCTCATCTTCTGCCGCCAGTGTAATCACCCATGAATCAGATGAGCATGAAGAGAGCAGTAGCTCCAGCATCTTCCCTTACTTTAGAAGAAAACCTTGA 738 0.4797 MEKVNFVKNGELRLPPGFRFHPTDEELVVQYLKRKVYSCPLPASIIPEVDVCKSDPWDLPGDLEQERYFFSTKEAKYPNGNRSNRATNSGYWKATGLDKQIVASKGNQVVGMKKTLVFYRGKPPHGFRTDWIMHEYRLLNSPTSSQSQRPRQSPVVEVAMENWVLCRIFLKRRSGGRNGEEKEIESLRGRVDNRKVRKSRVVFYDFLAQNKTDSSSSAASVITHESDEHEESSSSSIFPYFRRKP 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01732 245 MobiDBLite consensus disorder prediction 211 245 - -
Spst1g01732 245 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 214 - -
Spst1g01732 245 Pfam No apical meristem (NAM) protein 15 138 IPR003441 GO:0003677|GO:0006355
Spst1g01732 245 ProSiteProfiles NAC domain profile. 14 171 IPR003441 GO:0003677|GO:0006355
Spst1g01732 245 Gene3D NAC domain 23 175 IPR036093 GO:0003677|GO:0006355
Spst1g01732 245 SUPERFAMILY NAC domain 10 171 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01732 Spst-Chr1 21488050 21488991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01732 1 212 NAC Transcription Factor Family AT5G13180 60.889 2.20e-95 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst1g01732 NAM 8.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01732 - - var:108321729 393.275