Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01725 ATGCGAGATCCAAATGGAGTGAATAAAGGATATGGATTTGTTGCATATACAAATCCGGAGGACGCAAATCGGGCTGTATCCGCACTGGTCGCGATCCTAGCGTTGTTGAGTAGGACTTACGAGATTATTCCACCGGTGAATTGGGGGATTCGGATTGTGCCGGAGAAGAAGGCGTTTGTGATTGAGCGATTCGGGAAGTACGTTAAGACTCTTCCCTCTGGAATCCATTTTTTGATTCCTTTCGTTGATCGTATCGCTTATGTACATTCGCTCAAGGAGGAGGCTATTAACATTCCCGACCAGAGTGCTATTACCAAGGACAATGTCACCATCCTCATCGATGGAGTGCTTTATGTCAAGATTGTGGATCCTAAGCTGGCGTCTTATGGGGTGGAGAATCCCATTTATGCTGTCATTCAACTGGCACAAACAACAATGCGTAGTGAGCTTGGTAAGATTACTCTTGACAAGACTTTTGAGGAAAGGGACACACTCAATGAAAAGATTGTGGAGGCCATTAATGTGGCTGCCAAAAGTTGGGGTCTGGAGTGCCTTCGATATGAAATAAGGGATATCTCTCCTCCACGTGGAGTGAGAGCAGCTATGGAGATGCAAGCAGAGGCAGAAAGAAAAACGAGAGCTCAAGTTCTTGAATCTGAAGGAGAAAGACAGGCACACATAAACATTGCCGATGGAAAGAAGAGTTCAGTGATCTTAGCATCAGAAGATACGAGGATGGATCAAGTTAACAGAGCCCAAGGTGAGGCTGAAGCCATCCTAGCTAAAGCAAAAGCAACAGCTGAGGGACTGGCTCATGTGTCAGCATCCCTAAAAGAAAATCGAGGACCAGAGGCAGCTAGTTTAAGGATTGCAGAGCAATATATTCAAGCTTTCAGTAATATAGCCAAGGAGGTACAATTTTCACAAATGAGGATTGCTGAGATGAGACCACAATTTTCACTAGGTGCACCACCTCGAATTCTAACGTACCCTACGAGGCCTCCTGAGATGACACCACAATTATTGTATGGGCAAACACATCGAGCAATCATAACTCAAACTGCATTTGGTTTCCAGCAACAGTTTTTTGGTGGAGGGACGGGTCCAGCGCCAGTCTTCTATCCAGTTCTTCTGCCGCCGCCCAGAGGACCCCAAGAAGCAGGTCCTATGCGATTGCCAATTTTACCCCAACAGGTCTTATTCTGCATTCCATTGGTGATTCCTTTGTATTTTCCGTTCTCTATTGCTGATGTGGATACTTGTTGCTGTGGTTTTCAGATGGGTCCAAGGGGACCTATTTATCATAATCCTCCTCCTGCCCCCAATGCTCAAAATATTCGTCCGGAACCGAAAGGAACAGCTGAAGAAATGCCCCCTTTTATTGGCACTGGTCAGCCAATCCCAATTCAGGCCCTGGCAGCAGCCGTTGCCAATGCTACTACTCCTGATCAGCAGAGGATTCTGCTTGGGGAAACTTTATTCCCGTTAGTAGAAAAGCTGGTGCGTGATGCAGCACCAAAGGTTACTGGTATGCTTTTGGAGATGGACCATGCTGAGGTATTACATCTGATTGAGTCACCAGATGCTCTCGACACAAAAGTTACTGACGCCATGTATTTGTTGAGAAAATTTGAA 1635 0.4593 MRDPNGVNKGYGFVAYTNPEDANRAVSALVAILALLSRTYEIIPPVNWGIRIVPEKKAFVIERFGKYVKTLPSGIHFLIPFVDRIAYVHSLKEEAINIPDQSAITKDNVTILIDGVLYVKIVDPKLASYGVENPIYAVIQLAQTTMRSELGKITLDKTFEERDTLNEKIVEAINVAAKSWGLECLRYEIRDISPPRGVRAAMEMQAEAERKTRAQVLESEGERQAHINIADGKKSSVILASEDTRMDQVNRAQGEAEAILAKAKATAEGLAHVSASLKENRGPEAASLRIAEQYIQAFSNIAKEVQFSQMRIAEMRPQFSLGAPPRILTYPTRPPEMTPQLLYGQTHRAIITQTAFGFQQQFFGGGTGPAPVFYPVLLPPPRGPQEAGPMRLPILPQQVLFCIPLVIPLYFPFSIADVDTCCCGFQMGPRGPIYHNPPPAPNAQNIRPEPKGTAEEMPPFIGTGQPIPIQALAAAVANATTPDQQRILLGETLFPLVEKLVRDAAPKVTGMLLEMDHAEVLHLIESPDALDTKVTDAMYLLRKFE 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01725 545 Pfam C-terminal region of band_7 272 304 IPR032435 -
Spst1g01725 545 Pfam Poly-adenylate binding protein, unique domain 479 541 IPR002004 GO:0003723
Spst1g01725 545 SMART poly_2 481 544 IPR002004 GO:0003723
Spst1g01725 545 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 469 545 IPR002004 GO:0003723
Spst1g01725 545 SUPERFAMILY Band 7/SPFH domain 79 212 IPR036013 -
Spst1g01725 545 PRINTS Stomatin signature 138 155 IPR001972 GO:0016020
Spst1g01725 545 PRINTS Stomatin signature 158 181 IPR001972 GO:0016020
Spst1g01725 545 PRINTS Stomatin signature 103 124 IPR001972 GO:0016020
Spst1g01725 545 PRINTS Stomatin signature 55 77 IPR001972 GO:0016020
Spst1g01725 545 PRINTS Stomatin signature 201 222 IPR001972 GO:0016020
Spst1g01725 545 PRINTS Stomatin signature 182 200 IPR001972 GO:0016020
Spst1g01725 545 Pfam SPFH domain / Band 7 family 52 222 IPR001107 -
Spst1g01725 545 Gene3D Band 7 domain 76 208 IPR036013 -
Spst1g01725 545 SUPERFAMILY PABC (PABP) domain 426 544 IPR036053 GO:0003723
Spst1g01725 545 PANTHER STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL 40 306 - -
Spst1g01725 545 Gene3D - 1 38 IPR012677 -
Spst1g01725 545 Gene3D - 464 544 - -
Spst1g01725 545 SUPERFAMILY RNA-binding domain, RBD 1 29 IPR035979 GO:0003676
Spst1g01725 545 CDD SPFH_paraslipin 86 196 - -
Spst1g01725 545 SMART PHB_4 48 206 IPR001107 -
Spst1g01725 545 FunFam Stomatin-like protein 2, mitochondrial 76 208 - -
Spst1g01725 545 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 29 IPR000504 GO:0003723
Spst1g01725 545 MobiDBLite consensus disorder prediction 438 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01725 Spst-Chr1 21308301 21312771 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01725 10 542 Eukaryotic Initiation Factors Gene Family AT4G34110 27.242 1.09e-33 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01725 K26392 - gmx:100776545 480.715