Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01724 ATTACCGCAATCAGTTTTTTAGTTTTCAAGAAAAAAAGAAAAAGAAAAGAGATAGCAATGGCGCAAGCTCCAGCGGAAGACCATTTTTTCAACACGGCATTGTACGTTGGGGATCTTGACAGCAGCGTCACCGAAGATCAGCTCTATGATCACTTCAACGTGGTTGCCCAAAATTTGGATAAGTCAATCGATCACAAGGATCTATTCGATGTTTTTGCGACTTTTGGAAATATTCCATCTTGCAAGGTTGCGAGGGATGCTTCTGGCGTGTCTAAGGTCATGCTTTTGTGCGCCTCTGCAAAAGAGGCTACTGACAGGTTAAATGGCATGCTGCTCAATGATAAGAAGGTCTATGTGGGTCCTTTCATGCGAAAGAAGGATAGAGAGGCTGTTCCTAGTGGTGACGCAAACTTTAGTAATGTTTATGTAAAAAACCTGTCGCATAAAATAACGGATGCTGAATTGGGGACAATTTTTGGAAAATATGGACCCATTACTAGTGCTGCAGTGATGAAAGATGCAGAAGGTAGATCAAAAGGTTTTGGTTTTGTCAATTTCACAAATGCTGCTGCTGCTAGAGCTCGGGACGCTCTTGATGGAAAGACTTTTGATGGTAGGCAGTGGTATGTTGGAAAAGCCCAGAGAAAAACTGAAAGGGAGCTTGAGCTGAAAGAGCGTCATGAGCAGAATTGGAAGCGTCAACCTTATAAGCAAGGTACAAACTTGTATATCAAGAACTTGGACAGTAGTATTGGGGATGAATAA 765 0.4209 ITAISFLVFKKKRKRKEIAMAQAPAEDHFFNTALYVGDLDSSVTEDQLYDHFNVVAQNLDKSIDHKDLFDVFATFGNIPSCKVARDASGVSKVMLLCASAKEATDRLNGMLLNDKKVYVGPFMRKKDREAVPSGDANFSNVYVKNLSHKITDAELGTIFGKYGPITSAAVMKDAEGRSKGFGFVNFTNAAAARARDALDGKTFDGRQWYVGKAQRKTERELELKERHEQNWKRQPYKQGTNLYIKNLDSSIGDE 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01724 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 215 IPR000504 GO:0003723
Spst1g01724 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 124 IPR000504 GO:0003723
Spst1g01724 254 SMART rrm1_1 140 211 IPR000504 GO:0003723
Spst1g01724 254 SMART rrm1_1 53 120 IPR000504 GO:0003723
Spst1g01724 254 Gene3D - 52 120 IPR012677 -
Spst1g01724 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 208 IPR000504 GO:0003723
Spst1g01724 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 117 IPR000504 GO:0003723
Spst1g01724 254 Gene3D - 131 236 IPR012677 -
Spst1g01724 254 SUPERFAMILY RNA-binding domain, RBD 57 132 IPR035979 GO:0003676
Spst1g01724 254 SUPERFAMILY RNA-binding domain, RBD 133 220 IPR035979 GO:0003676
Spst1g01724 254 PANTHER RNA BINDING PROTEIN 53 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01724 Spst-Chr1 21306871 21308160 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01724 53 254 Eukaryotic Initiation Factors Gene Family AT4G34110 57.416 4.01e-73 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01724 K13126 - gmx:100778879 228.409