Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01707 ATGCGGATGAGCTGCAATGGATGTCGTGTTCTCAGAAAAGGTTGCAGTGAAAATTGCAGCATCAGACCCTGTTTACAGTGGATCAAAAGCCCAGAATCTCAAGCCAATGCTACTGTCTTTCTCGCTAAGTTCTATGGCCGTGCTGGGCTCATGAATCTCGTTAACGCAGGCCCCGAACATCTTCGTCCAGCGATCTTTCGTTCCTTGTTGTACGAGGCATGCGGCCGGATAGTGAACCCGATTTACGGTTCAGTTGGTTTGTTGTGGTCGGGGAGCTGGCAGCTGTGTCAAGCCGCCGTGGAAAACGTCTTGAAAGGTGCGCCGATTACCCCCATCACGTCGGAAGCCGCGGCTAGCGGGCGAGGCCCACCCCTCAAGGCCTACGACATACGTCATGTGTCAAAAGATGAGAACTCCGCCGCGTCGAACGAAACTCAGCAGCAACGAGTCAAGACTCGGTCTCGGGTCAAGCGACCTCTCGCTGACGCCAAGCCCAAATCCACCTCCAACGAAAACAATAACAAGGGAAACGATTTGGGTTCCGTTGAACCGGGTTTGCTGACATGCGAATGGACCGAAGAGGTGATGAACCGGTCTGGAAGTCACGAATCGTCGCTGAGCCACCAGTCGGAGGCGGCGAATGCCGTGGAGTCCGAGAGCATGGTGTCGGTGGAGACGGCGGAGGCTTCGATCCTCTTCCGAGATGAACCGGAGTCGAATCCGAAGCGCGTGGAACGAAGCGATGATGTTGGTTTGGAGCTTACGCTTGGGTTCGAACCGGCTTCACGTGCGACGCACGTGGTTCCGGTGAAGAAGAGAAGGATCGAGTTGAAGAATTTTAGCGGTTCGGCTGAGAGTGAGTCGTGCAAGATGGAGCTGGGGCTTGAATTCTCCGCTTGA 900 0.55 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVENVLKGAPITPITSEAAASGRGPPLKAYDIRHVSKDENSAASNETQQQRVKTRSRVKRPLADAKPKSTSNENNNKGNDLGSVEPGLLTCEWTEEVMNRSGSHESSLSHQSEAANAVESESMVSVETAEASILFRDEPESNPKRVERSDDVGLELTLGFEPASRATHVVPVKKRRIELKNFSGSAESESCKMELGLEFSA 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01707 299 MobiDBLite consensus disorder prediction 196 221 - -
Spst1g01707 299 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 256 - -
Spst1g01707 299 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Spst1g01707 299 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Spst1g01707 299 MobiDBLite consensus disorder prediction 134 183 - -
Spst1g01707 299 MobiDBLite consensus disorder prediction 165 179 - -
Spst1g01707 299 PIRSF AS2 1 299 IPR017414 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01707 Spst-Chr1 21046015 21047082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01707 1 295 AS2 family AT3G02550 57.239 2.66e-109 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst1g01707 LOB 2.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01707 - - gmx:100807854 528.865