Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01697 ATGAGTATTCGGTCCAAAAACTTGAACTCTGTATTCTATGCAGATTCGTACCATCCTATTCAAGCTGGAAGCATCGACGGGACCGATGTTGTTCCTCACGACAATGCCGTTTATCGTGCTCAACTCTGTTCCTCTATTGGCCTCTATGACCCACTTGGTGATCCTAAGGCCACTGGAGACCCTTACTGCACTCTCTTCGTTGCACGTCTCTCTCGCCTCACCACCCAAGATACTCTCCACAAGGTTATGAGTAAGTATGGCCAGGTGAAGAACTTGCGCTTGGTCAGGGACATTGTGACTGGAGCTTCTCGTGGTTATGGCTTTGTTGAATATGAAACTGAAAGGGAGATGCGACGAGCATATATGGATGCTCACCATTTGATTGTTGATGATTGTGAAATCATAGTTGATTACAACAGACAGCAATTGATGCCTGGATGGATTCCTAGAAGGCTAGGTGGTGGTCTTAGTGGCAAGAAGGAATCAGGACAACTTCGTTTTGGGGGAAGAGAAAAACCATTTCGTGCACCCTTGAAACCAATCCCATATGAGGAGTTGAAGAAGCTTGGCATCCCTCCTCCGCCTGAGGGAAGGTACATGTCACGCTTTCAGGTACCATCGCCTCCTAGAAGAGAAAGTAACCTTTCAGACAGGGAAGAAGACTCTCGTAGACATAGAAGAGGGTCTGATGACAGAAACAAGAAGGAAGATTCCCTCAGAAGTTCAGTGGACATGGAGGAAGGACACCACAGAAGAAGTGCAAGACACCCAGATAATGACCACTCACATGGAAGAAGTTCATTGGAGAGGAGTGGCGGTTACCATGACAGGAGTTCATCTGAGAAAAAACATCGACACCTGAGATCTACTGACAAAGACAAAAGGAGTTCATCTGAAAAAGAAAGATTTACTGATAAAGACAAAAGGAGTCCATATGAGAAAGAATATGGGCACCGGCATTCTATGGACAAAGACAAGCATTCTCAAAAGAGAAAAGAAAGAGATGATATGTCTCAAATGCAGCGAAAGTATAGACACCATTCCCGTGAGGACTAA 1056 0.4517 MSIRSKNLNSVFYADSYHPIQAGSIDGTDVVPHDNAVYRAQLCSSIGLYDPLGDPKATGDPYCTLFVARLSRLTTQDTLHKVMSKYGQVKNLRLVRDIVTGASRGYGFVEYETEREMRRAYMDAHHLIVDDCEIIVDYNRQQLMPGWIPRRLGGGLSGKKESGQLRFGGREKPFRAPLKPIPYEELKKLGIPPPPEGRYMSRFQVPSPPRRESNLSDREEDSRRHRRGSDDRNKKEDSLRSSVDMEEGHHRRSARHPDNDHSHGRSSLERSGGYHDRSSSEKKHRHLRSTDKDKRSSSEKERFTDKDKRSPYEKEYGHRHSMDKDKHSQKRKERDDMSQMQRKYRHHSRED 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01697 351 Gene3D - 50 171 IPR012677 -
Spst1g01697 351 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 141 IPR000504 GO:0003723
Spst1g01697 351 Coils Coil 330 350 - -
Spst1g01697 351 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 12 235 - -
Spst1g01697 351 SUPERFAMILY RNA-binding domain, RBD 50 169 IPR035979 GO:0003676
Spst1g01697 351 FunFam Small nuclear ribonucleoprotein U11/U12 subunit 35 50 171 - -
Spst1g01697 351 SMART rrm1_1 64 137 IPR000504 GO:0003723
Spst1g01697 351 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 134 IPR000504 GO:0003723
Spst1g01697 351 MobiDBLite consensus disorder prediction 212 351 - -
Spst1g01697 351 MobiDBLite consensus disorder prediction 152 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01697 Spst-Chr1 20953445 20956777 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01697 63 139 Eukaryotic Initiation Factors Gene Family AT1G49760 31.169 2.58e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01697 K13155 - gmx:100814109 558.14