Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01690 ATGACTGAAATTGAATGCCATGCAAAATCAACCACAAGCACCCCACCCCTAAAGCTCTTTGGCATCAACATTAACAAGTCCCCCGAAGAACAAACTGATCACGAAGCAAGTTCCAATTCTGAGCTTTTCAATCCAAGAAAATACGAGTGTCAGTACTGCTTCAGAGAATTCGCAAACTCACAGGCACTAGGAGGGCACCAAAACGCGCACAAGAAAGAGAGACAGCTCTTGAAACGTGCTCAAATGCAAGCTGCTCGCGGCTTTGTCGCTTCACACATTCACAACACAATCATATCCACCTTCACACCACAATCTCAGCCACATTTTTCGTGGCTATGCACGCCACAAGCATGGTCAAGTGGTGGTGCATATGACTCAGGAGTCGCTTTTGTGACTCCTGGAAGACGAGTTTATGCTACATCTGGTGCCTCCATTACTGATGGCCGTGGCCACCGCAGTCCTCCGCCGGAGTTCGGTGGCTCTAAAAGCGGTAGTTTCAATGACAGAGGGAACGGTGGTGGTCATGGTCATGAACGAGGATTCGGTTTGGATTTACATCTTAGCTTATGA 570 0.4807 MTEIECHAKSTTSTPPLKLFGININKSPEEQTDHEASSNSELFNPRKYECQYCFREFANSQALGGHQNAHKKERQLLKRAQMQAARGFVASHIHNTIISTFTPQSQPHFSWLCTPQAWSSGGAYDSGVAFVTPGRRVYATSGASITDGRGHRSPPPEFGGSKSGSFNDRGNGGGHGHERGFGLDLHLSL 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01690 189 MobiDBLite consensus disorder prediction 141 179 - -
Spst1g01690 189 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Spst1g01690 189 PANTHER ZINC FINGER PROTEIN 5 9 189 IPR044299 GO:0010090
Spst1g01690 189 Gene3D Classic Zinc Finger 25 99 - -
Spst1g01690 189 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
Spst1g01690 189 SUPERFAMILY beta-beta-alpha zinc fingers 45 75 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01690 Spst-Chr1 20897684 20898253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01690 12 189 C2H2 Transcription Factor Family AT1G67030 43.415 2.65e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst1g01690 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01690 - - gmx:100527555 263.462