Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01684 ATGCAACTTCTTCATGGCACCTTTTTCTCAATTTTGGTCATAACCATCACCCTAAACCAAATTCCAACATCTTGTGCTGGTGATGTGCATTATTCGAAATGCAGTTCTCCATTTCATTGTGCAAATCTCAAAAACCTGAGTTATCCTTTCTGGGGATTTACTAGACCCCCATATTGTGGGCACCCTGCGTTTAACCTACAATGCACAGGTGAAGTAGCAACGCTTACCTTTATGTCAGAGAGTTATAGAGTTCTTGAAGTCAATAACTCGGATCATAGACTCAAACTTGTAAGAACTGAATACTGGAACAACATCTGTCCAACTAGCCTCAGGAACATCGATATAGGTTGCACTTTCTTTGATTATGGTTCAGATTCTCAGAACCTGACTCTCTACTATGATTGTCCTTCATTTCCTCAATCAGATAGCTTTTCCCCTCGCTTTAACTGTAGTATAAATGGAACGCAAATGATTAACTATTTTGTGATAGAGAGCATGCTTGAATATGCTGAGTCAAGTGAAATACTGGGAACATGCAAATCTAGAGTAGTTGTTCCGATTTTTGAGTCAGAAGCTGAAGTCCTACGAACAAACTCAACAGTTGAAAATCTTAAGGCCGTTCTTGATAATGGATTTGGCGTGGAGTGGAATGCAAACAATAGTTTGTGTGATGAATGCCAAAACTCAGGTGGGCATTGTGGTTATAACCCAAGCTCAAGTGAATTTGCTTGCTATTGCAGGGATGGATCTTTTCCATCCACATGTAAAAATTCAGATAGAATGGTAGATATTAGAAAACTAGCTAGATCTAATGGAAAATATCTACAAATCCCCTTTTCTGAGTTCAAACCTCAAATTATCAAATGTGACAATATGTCACCTCTTAGTGTTGTAGAAGGGGAAAAGCCTGAGTCTATGAAAATCTTGACTAATCCAGAGGAGATCACGGCTGAAATGGTCATGCAGCTCCTGTTTCCTTTCTTCATATCCCCCTGTTCAAAGCATAGAACCATAGTTCATAGGACTGCCACCACGAACGAACATCAAACTATGTTGTCCCTGTCCTCCGCCACCACCACCATCGTAGCCATCACCTTCATCCTCTCCCTCCACCATACGACGTCGTTGCCACCCCATGCACCACTCTCCACCTGCCGCGTCACCTCCTTCAACTGCGGCACCATCACCAACCTCTCCTACCCTTTCACCGGCGGCGACCACCCCTCCTTCTGTGGGCCACCACAGTTCCATTTGAACTGCCAAAACGGTGTCGTCCCCGTTTTGAACATCTCATCACTGAGCTACCGAGTCATTAGTATCAACTCGGTGGCTCACACCCTCACCTTAGCGAGATTAGACCTTTGGAATGAGACATGCACGAATGTCTACGTGAACTCAACTTTTGATGGGCCCATCTTCAGCTACGGTTCGGGGAACCAAAACCTAACTTTGTTCTATGAGTGCAAACCCACTTCAGTGTTCACGGAAACGCCAGAAAATTTGTTTCACTGCGAGAGTAAAGGGGATATGAATGAGTCTTATTCTTTGGTAGGTCCGTTACCTTCGGACCCTATTCTTGGAGTTGTGGAATGCGTTGAACATATTGCGGTGCCAATTCTTAAAGAGCAGGCTGATAGGCTGGTGGAAAACCGGTCTTTACTTGGGGAGATTCTGATGAAGGGGTTTAATGTGAACTATAAGAATCCTTATGACAATGTATGCGTTGAATGTGTTGGTTCTGGTGGCCAGTGTGGGTTTGATTCTGATGAGAACGAACCTATTTGTATTTGTGGGGATCAGTTGTGTCCCACTCCAGGTATTCCAGCTTTTCTTTTTGTTAATTCTCTCTTTAATCCCTATTTCTTTGCACCTTTTTCTTCACTTTTCTCTGCCTCTCTCTTGATTCCTTTTCATCACCTATATCCAGCGTTGGCTGCCATTTTGTTTGGAAATTCTCCTAATTTTGCACGCCAAGCAAATCAGGGTTTGATCAAATTAGTTGATGTTCCAGTGTTGCAGACTTGCAGTGTGGAATTGCTACATGGTAAAAGCAACAAAGTAGGTTTAATAATAGGCATTTGTGTAGGAGGAGTTGCAGTCCTCGTTGTCATTCTAGGATGTGTGTACTTTATGATTCAAAGAAGAAGAAAAATTGCCTATGAATCAAGAAGCATGGAACTCTTCATAGCCCCTACTTCAAGCGCAGACACTTTTGCATCTACAACTAATACGTCTCAAAGTCTATCTTCTTACCAATCTTCCAAGTCTGACCCAGTGCCCAGGAGTTACTACTTTGGTGTCCAGGTCTTCACCTACGAGGAACTGGAGGAAGCTACAAAAAACTTTGACACTTCTAGAGAACTTGGTGAGGGAGGTTTTGGCACCGTTTACAAAGGTGAACTCAAAGATGGACGTATAGTTGCAGTGAAACGTCATTATGAAAGCAACTCTAGACGTATTATGCAGTTCATGAATGAAGTTCAGATTCTAGCCGGCTTAAGGCACAAGAACCTTGTGACACTCTTTGGATGCACCTCTAAACATAGCAGAGAACTTCTCCTTGTTTATGAATTCATACCTAATGGAACAGTTGCTTATCATCTTCAAGGAAGAAGCTCAGAATCAACTTTACTCCCATGGTCTATAAGATTGAACATTGCTGTTGAAACAGCAGAGGCTCTAGCCTACCTACATGCAAAGGGTGTCATACACCGCGATGTTAAAACCAACAACCTTCTCCTGGATGATCAATTTCGAGTAAAGGTTGCCGATTTTGGTCTCTCAAGGGATTTCCCAAACCATGTCACGCATGTGTCAACAGCTCCACAGGGAACACCTGGTTATGTTGACCCTGAGTATTATCAGTGCTACCAACTCACTGATAAAAGTGATGTTTACAGCTTTGGAGTGGTTTTGGTTGAGCTCATATCATCATTGCAAGCTGTGGACATCAACAGGAATCGCAGTGATGTAAACTTGTCAAACATGGCTGTCAATAAAATTCAAAACCAGGAACTGCATGAGTTGGTTGATCCTTATCTTGGGTTTGAGTGGGATCATGCTGTAAGGAGGATGACGACAGCAGTGGCAGAATTGGCCTTTAGGTGTTTACAACAGGAAAGAGAGATGAGACCATCCATGAATGAGGTTGTGGAAATCTTAAGAGGAATCAAGAGTGATGGGCATGGTACACGGGAAGAGACAGATGTATTGGATATTAGGACTGATGAAATTATACTTTTGAAGAAGGCTCATTCCCCGGTTTCACCAGATTCAGTTGTTAACAAATGGGTTAGCGGCTCCTCTGTATCTAATTCCTCATAG 3324 0.4269 MQLLHGTFFSILVITITLNQIPTSCAGDVHYSKCSSPFHCANLKNLSYPFWGFTRPPYCGHPAFNLQCTGEVATLTFMSESYRVLEVNNSDHRLKLVRTEYWNNICPTSLRNIDIGCTFFDYGSDSQNLTLYYDCPSFPQSDSFSPRFNCSINGTQMINYFVIESMLEYAESSEILGTCKSRVVVPIFESEAEVLRTNSTVENLKAVLDNGFGVEWNANNSLCDECQNSGGHCGYNPSSSEFACYCRDGSFPSTCKNSDRMVDIRKLARSNGKYLQIPFSEFKPQIIKCDNMSPLSVVEGEKPESMKILTNPEEITAEMVMQLLFPFFISPCSKHRTIVHRTATTNEHQTMLSLSSATTTIVAITFILSLHHTTSLPPHAPLSTCRVTSFNCGTITNLSYPFTGGDHPSFCGPPQFHLNCQNGVVPVLNISSLSYRVISINSVAHTLTLARLDLWNETCTNVYVNSTFDGPIFSYGSGNQNLTLFYECKPTSVFTETPENLFHCESKGDMNESYSLVGPLPSDPILGVVECVEHIAVPILKEQADRLVENRSLLGEILMKGFNVNYKNPYDNVCVECVGSGGQCGFDSDENEPICICGDQLCPTPGIPAFLFVNSLFNPYFFAPFSSLFSASLLIPFHHLYPALAAILFGNSPNFARQANQGLIKLVDVPVLQTCSVELLHGKSNKVGLIIGICVGGVAVLVVILGCVYFMIQRRRKIAYESRSMELFIAPTSSADTFASTTNTSQSLSSYQSSKSDPVPRSYYFGVQVFTYEELEEATKNFDTSRELGEGGFGTVYKGELKDGRIVAVKRHYESNSRRIMQFMNEVQILAGLRHKNLVTLFGCTSKHSRELLLVYEFIPNGTVAYHLQGRSSESTLLPWSIRLNIAVETAEALAYLHAKGVIHRDVKTNNLLLDDQFRVKVADFGLSRDFPNHVTHVSTAPQGTPGYVDPEYYQCYQLTDKSDVYSFGVVLVELISSLQAVDINRNRSDVNLSNMAVNKIQNQELHELVDPYLGFEWDHAVRRMTTAVAELAFRCLQQEREMRPSMNEVVEILRGIKSDGHGTREETDVLDIRTDEIILLKKAHSPVSPDSVVNKWVSGSSVSNSS 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01684 1107 ProSitePatterns Protein kinases ATP-binding region signature. 788 810 IPR017441 GO:0005524
Spst1g01684 1107 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 761 858 - -
Spst1g01684 1107 Pfam Wall-associated receptor kinase galacturonan-binding 387 450 IPR025287 GO:0030247
Spst1g01684 1107 Pfam Wall-associated receptor kinase galacturonan-binding 34 97 IPR025287 GO:0030247
Spst1g01684 1107 SMART serkin_6 782 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01684 1107 Pfam Wall-associated receptor kinase C-terminal 150 249 IPR032872 -
Spst1g01684 1107 Pfam Wall-associated receptor kinase C-terminal 525 600 IPR032872 -
Spst1g01684 1107 Gene3D Phosphorylase Kinase; domain 1 754 858 - -
Spst1g01684 1107 ProSiteProfiles Protein kinase domain profile. 782 1065 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01684 1107 SUPERFAMILY Protein kinase-like (PK-like) 756 1057 IPR011009 -
Spst1g01684 1107 ProSitePatterns Serine/Threonine protein kinases active-site signature. 902 914 IPR008271 GO:0004672|GO:0006468
Spst1g01684 1107 Pfam Protein kinase domain 783 1052 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01684 1107 CDD TM_EGFR-like 686 718 - -
Spst1g01684 1107 Gene3D Transferase(Phosphotransferase) domain 1 859 1067 - -
Spst1g01684 1107 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 361 1102 IPR044652 GO:0004672
Spst1g01684 1107 FunFam Wall-associated receptor kinase-like 20 859 1067 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01684 Spst-Chr1 20848433 20854558 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01684 689 1107 Receptor kinase-like Gene Family AT1G25390 53.226 4.29e-140 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Spst1g01684 Pkinase 6.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01684 - - gmx:100811407 658.292