Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01673 ATGTCAATACCCTCCTATCCAATGCCTCAATATCGTCCACAAAACATAGAGGAGGAGAAGCTTCGATCCTTCTGGGAGAAGCAGTTGTTGGATATTCAAGTTGCCGAAGCATTTAAGAGCCAGCACAAGTTGCCGCTAGCTCGAATCAGAAGGATCATGAAAACAGAAGGAGATGTGCAGATGGTCAGTGCTGAAACTCCCATGCTGATGTCAAAAGCGTGTGAGATTTTCATCCAGGAGCTCACTTTTCGTGCCTGGATGCGTGCTGAAGAGAGCAACAAGAGTACTGTGCAGCCTTGTGACGTTGCCAAGGTTATTATGCAGAATGATGCCATGCATTTCCTCACTGGTATTGTTCCATATAACCTCCAACATTTCTGTGCTTATGGTGCTGAGCCGGAAGAGAATGCTGCTGGAAACATTGCAGAAAGACGGTCAAGCCAAACTGCCCTTCCTGAAACACCTGGTTTTATAGGAAATCCTATGAATGTGATGGATATGGGCAGGGACTTGGAGGCAGGAAACCAACTGCTTATTCAACCTAACAACGTGATGCAGTCTCCCTTTGTTATTCCTTCAGATCAATTGCCTTACAATTTTCATATCAAGTGA 612 0.451 MSIPSYPMPQYRPQNIEEEKLRSFWEKQLLDIQVAEAFKSQHKLPLARIRRIMKTEGDVQMVSAETPMLMSKACEIFIQELTFRAWMRAEESNKSTVQPCDVAKVIMQNDAMHFLTGIVPYNLQHFCAYGAEPEENAAGNIAERRSSQTALPETPGFIGNPMNVMDMGRDLEAGNQLLIQPNNVMQSPFVIPSDQLPYNFHIK 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01673 203 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 43 105 IPR003958 -
Spst1g01673 203 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 17 128 - -
Spst1g01673 203 FunFam Nuclear transcription factor Y subunit C 8 121 - -
Spst1g01673 203 Gene3D Histone, subunit A 7 121 IPR009072 GO:0046982
Spst1g01673 203 SUPERFAMILY Histone-fold 27 115 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01673 Spst-Chr1 20775471 20777596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01673 23 188 CCAAT-HAP5 Transcription Factor Family AT1G54830 38.922 4.38e-29 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Spst1g01673 CBFD_NFYB_HMF 2.4e-14 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01673 - K08066 gsj:114370134 183.341