Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01667 ATGGATTCTCAAACCCTAGACTCCACCCAGCTATTCCTCACCGCCCTCAAAGCCCTCCAACCCCAACCCCCTCCACCACCATCCACCTCTCTCTCCCCACTCCCCTCCTCACTCCCTAACTCCAAACTCATCCCCCACACCCGCTTCCTCGTCGACGCCTTCCGCTACGCCGGCCCCCACTCCCACTCCTACTTCCTCTCCCACTTCCATTCCGACCACTATACCGGCCTCTCTTCCTCTTGGTCTCGCGGCATCATCTTCTGCTCTGCCATCACCGCCTCTCTACTCCGCCACGTCCTTCGCGTCCCCTCCGCCCTCGTCGTCCCCCTCCCCCTCCGCCAACCTCTCCGTATTGACGGCGCCCAAGTCACCCTCCTCGACGCCAACCACTGTCCCGGCGCCGTCCAGTTTCTCTTCGCTCTCCCCTGTGCCGATGGAACCACCTCTCTCAGGTACGTCCACACCGGCGACTTCCGCTTCTCTAATTCCATGGTTTCGGAACCCGCCCTTGCTCCCTTCGTCGGTGCCGATGCAGTGTTTCTCGACAGCACATATTGTGACCCTAAGTTTGTATTCCCCTCGCAAGAGGAATCCATTGATTACGTTGCCAGTGTTGTGGAGAGGGTTGAGCGTGAGTGTGATGGTTGTAATGATAAAGTTTTGTTTCTTGTTGCTACTTATGTTATTGGGAAGGAGAAGATTTTGCTTGAGCTTGCACGTAGGTTTAAGAGGAAGATACATGTTGATGCTAGGAAGATGGAGGTTTTGAGGGTTCTTGGGTATGGGGAGAGTGGTGAGTTTACTGAGAATGGGTTGGAGAGTAATATTCAAGTTGTTGGGTGGAATGTGTTGGGGGAGACTTGGCCTTACTTTAGGCCTAATTTTGTTAAGATGAAGGAGATTATGGCTGAGAGAGGGGGGTCCTACTCCAAGGTTGTGGGCTTTGTTCCAACAGGGTGGACCTATGAGGTGAAGCGCAGTAGGTTTGCAGTGAAGTCCAAGGATTCATTTCAGATTCATCTTGTGCCCTATAGTGAGCACTCGAACTATGATGAGCTCAGGGAGTATGTGAAGTTTTTGAAGCCAAAACGGGTTGTTCCGACTGTGGGTTTGGATGTTGAGAAGTGTGACAGTAAACATGCTGACAGAATTAGGAAGCATTTTGCTGGATTGGTCGATGAGACTGCTAATAAGCATGAGTTTTTAAGGGGTTTTTGTCGTTCACCGGGTGAATTGGGTTTCAAGGTTGAGAAGGGTGTTAGTGATGCTCTGGAACCAGGTAAAAGCGTAGACAAAGAAGTCATTCCATTGGAGGAGCCAGAAGGTGGTAAAAGTATTGATCCAGATGTGGCTGAGGGTTTGTCGTCTTTTATGGGAGATACTTGTACACAGGATCCTTCTTTGCTGAATGATGAAGAAAAAGAGAAAATAATTCAAGATCTTAGTTGTTGTTTGCCCACATGGGTCACCCGAAACCAGATGCTGGATATGATCAGCATCTCAGGGTGCAATGTCATTGAAGCTGTTTCTAATTTCTATGAACGTGAAACTGAATTCCATGAGCAGGTGATTTCCTGTCAAACTCCTGTTTCAACATCCAATTTCTGCGCATCAAATGACACTGATTCACTTGCAAAACCTAGCCTTAATAATACAAACAACACTTGCAAAAATATTGACATTTTCCCAAGTCAAGGCTCTAAATTAGCTATCCTGAGGCATAAAGTACCTAGTCCCATTTCTCCTGCCAAAAGGAAACGAAGTAGTGACAGTAAGCAAAACAAAAAAGGCAAAGCCACAGCCAAAGTCAAAACAAAATCTGAACCAAGTGGTTCGAAGCAGTCCACAATTACAAGATTCTTCAGTAAAGTAATACCTGAGATGTCCGGTGGTACTCAATCTGATAATTCTGAACTAAAGCTTGACCAAAGCTCTAATGTTGAAGACTTGTTGCCAACTGATGTTGGACAAACATACGATGATGAAATTGATCAATTTATGCAGATAATAAATGGGAATGAGTCATTAAAAAAACATGCCATCACTATAATTAAGAATACTAAAGGAGATGTCAATAAGGCATTGGATATATATTACTGTAGTCCTGAAAATTTTAGGGAAAATGAATTATCAGTTCAAGGGGAGAGCAAAATTGATAGACCTTTGTTGAAGAAGCCTGCATCAGAGCAATTGAGAATTATACCTGATATTTCTGGGCAGAAAGTGTTAAAGGATAATGTTGATGCTACTCAACTATCTCTACCACCTGACAAATACAACCCTAAAGAACATGCATGTTGGAGAGATGGACAGCCTGCACCATATTTACATATTGCACGAACCTTCAACCTGCTTGAGGGTGAGAGAGGAAAGATTAAAGCTACTTCATTGTTATGCAATATGTTCAGAAGCTTGTTGGCTTTATCTCCAGCAGATGTGCTTCCTGCTGTGTATCTATGCATAAACAAAATTGCTCCAGACCATGAAAATAAGGAACTAAATATTGGTGGAAGTTTAGTCACTGCGGCACTTGAAGAGGCATGTGGAACAGATCGTTTGAAAATAAGGGAGATGTATAACAAATTTGGTGATCTTGGTGATGTTGCTCAAGAATGTCGTCGAACACAGAGATTGCTTGCACCACCTACACCACTTCTAATTAAGGATTTTTTCTCTGCGCTACAAATGATTAGGACCATAGTGATGCCTGTATGTGTGTGCATCAGTGTACAAACAGGCAGTGGAAGCACATCTCGGAAGAAAGGCATCATTGTTCATCTCATGCATTCCTGCCGGGAGAAGGAGATAAAGTTTGTTGTTCGGACCTTGTTAGTTCATCAGCAGTCATATCAGGCTAGATTGAGTGACCTTCTCTCTACACATTACATTTGGATATCTACTGTTCTGAATGTCAGGAACCTAAGAATTGGGGCCATGCTTAGAACTGTTTTACCTGCATTGGCTCATGCTGTTGCTATGAATTCTGGCTCTACTTTTCACCAAGTAGGAACTGCAGAAAATTTGAAGGAGAAACTTCAGGTTCTTTCTATGGAAGTTGTTGAAGCATATAACATACTGCCAAATTTGGATCTCATAGTTCCATCTCTCATGAACAAAGGCATTGATTTTTCAGTTTCAAGTTTATCAATGGTTCCAGGAATCCCTATTAGGCCTATGCTAGCAAACGAGTCTTCACGAATCCTCTCTTACTTTATTAACACCCAATTGCTTCTTTCTTCCTTGTATTTTCCATTTCTTCATAGGATCACCAATGGTATTCCTCAAGCTCTGAAGCTATTTGAAAATAAAGCATTTACATGTGAATATAAGTATGATGGTCAGCGGGCTCAAATTCACAAATTAGTTGATGGATCAATTCGTGTTTTTTCAAGAAATGGGGACGAATCAACTTCAAGATTTCCTGATCTGATTGACATAATTAAGGAATCCAGCAAGCCTGTTGCATCAACTTTCATATTGGATGCGGAGGTGGTTGGTATTGACAGGAAAAATGGATATAGGATTATGTCTTTCCAGGAGCTATCTTCACGAGGGAGAGGTGGCAAAGATGCATTAGTTACTGCAGAGAGCATCAAGGTGGATATATGCATCTTTGTCTTTGATATCATGTTTGCAAATGAAGAACAGTTATTGGGTTGTCCTCTGCGCCTAAGACGAAAGTATCTGAAGGATTTGTTCTATGATGAGAAACCTGGGTATTTTGAATATGCAAAGGAAACAACTATTGAAGCAGATGATGCTTGCTTAACCTGTGAAGCCACATTAACCAAGATAAATGCTTTCCTGGAAGCTGCACTCCACTCTTCATGTGAAGGAATTATGGTGAAAACATTGGATATTGAGGCTGGCTATTTTCCATCAAAGCGTTCTGACAAATGGTTAAAAGTCAAGCGAGATTATGTGGAAGGATTAAATGATACTCTTGATTTAGTACCGATTGGTGCTTGGCATGGAAACGGAAGGAAAGCTGGATGGTATAGTCCATTTCTAATGGCGTGTTTCAATCCTGAGACAGAGGAGTACCAAAGCGTATGTCGTGTGATGTCCGGATTCTCAGATTCATTTTACATAGAGATGAAAGAATTCTTCTCTGAGGACAAAGTCTTGTCCAAAAAACCGCCATATTATCAAACAGGAGAGGCACCAGACATGTGGTTTTGTCCACAAGTCGTTTGGGAAATAAAAGGAGCAGACTTTACAGTATCCCCAGTTCATCATGCTGCAATTGGTTTAGTTCATCCATCTCGAGGCATTTCAATCAGATTTCCAAGATTTATTTGCTGCGTCTCAGACAGAAACCCAGAAGAATGTAGCACAGCTTCCGATATAGTTGAAATGTTTCATTCTCAGACTCGGAAGATGGATGTCACGGCTAAAGATGTAGAAATTTTAAAGGCAGATCTCTTGGCTTGTCGGACTCTTGGTAGACCACAAAGGAGTTACCCTATCCCACTTAAGTCGTGCTAG 4488 0.4307 MDSQTLDSTQLFLTALKALQPQPPPPPSTSLSPLPSSLPNSKLIPHTRFLVDAFRYAGPHSHSYFLSHFHSDHYTGLSSSWSRGIIFCSAITASLLRHVLRVPSALVVPLPLRQPLRIDGAQVTLLDANHCPGAVQFLFALPCADGTTSLRYVHTGDFRFSNSMVSEPALAPFVGADAVFLDSTYCDPKFVFPSQEESIDYVASVVERVERECDGCNDKVLFLVATYVIGKEKILLELARRFKRKIHVDARKMEVLRVLGYGESGEFTENGLESNIQVVGWNVLGETWPYFRPNFVKMKEIMAERGGSYSKVVGFVPTGWTYEVKRSRFAVKSKDSFQIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGLDVEKCDSKHADRIRKHFAGLVDETANKHEFLRGFCRSPGELGFKVEKGVSDALEPGKSVDKEVIPLEEPEGGKSIDPDVAEGLSSFMGDTCTQDPSLLNDEEKEKIIQDLSCCLPTWVTRNQMLDMISISGCNVIEAVSNFYERETEFHEQVISCQTPVSTSNFCASNDTDSLAKPSLNNTNNTCKNIDIFPSQGSKLAILRHKVPSPISPAKRKRSSDSKQNKKGKATAKVKTKSEPSGSKQSTITRFFSKVIPEMSGGTQSDNSELKLDQSSNVEDLLPTDVGQTYDDEIDQFMQIINGNESLKKHAITIIKNTKGDVNKALDIYYCSPENFRENELSVQGESKIDRPLLKKPASEQLRIIPDISGQKVLKDNVDATQLSLPPDKYNPKEHACWRDGQPAPYLHIARTFNLLEGERGKIKATSLLCNMFRSLLALSPADVLPAVYLCINKIAPDHENKELNIGGSLVTAALEEACGTDRLKIREMYNKFGDLGDVAQECRRTQRLLAPPTPLLIKDFFSALQMIRTIVMPVCVCISVQTGSGSTSRKKGIIVHLMHSCREKEIKFVVRTLLVHQQSYQARLSDLLSTHYIWISTVLNVRNLRIGAMLRTVLPALAHAVAMNSGSTFHQVGTAENLKEKLQVLSMEVVEAYNILPNLDLIVPSLMNKGIDFSVSSLSMVPGIPIRPMLANESSRILSYFINTQLLLSSLYFPFLHRITNGIPQALKLFENKAFTCEYKYDGQRAQIHKLVDGSIRVFSRNGDESTSRFPDLIDIIKESSKPVASTFILDAEVVGIDRKNGYRIMSFQELSSRGRGGKDALVTAESIKVDICIFVFDIMFANEEQLLGCPLRLRRKYLKDLFYDEKPGYFEYAKETTIEADDACLTCEATLTKINAFLEAALHSSCEGIMVKTLDIEAGYFPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGWYSPFLMACFNPETEEYQSVCRVMSGFSDSFYIEMKEFFSEDKVLSKKPPYYQTGEAPDMWFCPQVVWEIKGADFTVSPVHHAAIGLVHPSRGISIRFPRFICCVSDRNPEECSTASDIVEMFHSQTRKMDVTAKDVEILKADLLACRTLGRPQRSYPIPLKSC 1495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01667 1495 Gene3D - 1309 1469 IPR012340 -
Spst1g01667 1495 Gene3D - 1095 1308 - -
Spst1g01667 1495 Pfam DNA ligase N terminus 774 944 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Spst1g01667 1495 MobiDBLite consensus disorder prediction 576 615 - -
Spst1g01667 1495 CDD OBF_DNA_ligase_I 1313 1456 - -
Spst1g01667 1495 Pfam ATP dependent DNA ligase domain 1084 1304 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Spst1g01667 1495 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 754 1041 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Spst1g01667 1495 MobiDBLite consensus disorder prediction 585 603 - -
Spst1g01667 1495 Gene3D - 44 369 IPR036866 -
Spst1g01667 1495 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 278 1463 - -
Spst1g01667 1495 NCBIfam ATP-dependent DNA ligase 832 1454 IPR000977 GO:0003910|GO:0005524|GO:0071897
Spst1g01667 1495 Pfam ATP dependent DNA ligase C terminal region 1330 1435 IPR012309 GO:0003910|GO:0006281|GO:0006310
Spst1g01667 1495 Gene3D DNA ligase/mRNA capping enzyme 1113 1244 - -
Spst1g01667 1495 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 1081 1310 - -
Spst1g01667 1495 SUPERFAMILY Metallo-hydrolase/oxidoreductase 48 370 IPR036866 -
Spst1g01667 1495 FunFam DNA ligase 1113 1244 - -
Spst1g01667 1495 FunFam DNA ligase 191 347 - -
Spst1g01667 1495 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1108 1116 IPR016059 GO:0003909
Spst1g01667 1495 Gene3D - 191 347 - -
Spst1g01667 1495 FunFam DNA ligase 1309 1466 - -
Spst1g01667 1495 SUPERFAMILY Nucleic acid-binding proteins 1313 1457 IPR012340 -
Spst1g01667 1495 Pfam DNA repair metallo-beta-lactamase 265 370 IPR011084 -
Spst1g01667 1495 CDD SNM1A-1C-like_MBL-fold 42 188 - -
Spst1g01667 1495 Gene3D - 751 1060 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Spst1g01667 1495 ProSiteProfiles ATP-dependent DNA ligase family profile. 1195 1342 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Spst1g01667 1495 Coils Coil 1005 1025 - -
Spst1g01667 1495 CDD Adenylation_DNA_ligase_I_Euk 1049 1307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01667 Spst-Chr1 20520645 20536568 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01667 752 1457 Core DNA Replication Machinery Family AT1G08130 35.311 6.39e-148 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01667 - - gmx:100807673 2319.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01667 1 20520645 20536568 Spst1g01667 1 20520645 20536568 ECH