Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01662 ATGGCTTTACAGAACATTGGTGCTGCAAACAGCGATGATGCCTTCTACAGGTACAAGATGCCTAAGATGATTACCAAAATTGAGGGCAGAGGTAATGGCATCAAAACTAATGTTGTCAACATGGTTGATATTGCAAAGGCATTGGCAAGGCCAGCGTCTTACACCACTAAGTATTTTGGCTGTGAACTTGGGGCCCAGTCTAAGTTTGATGAGAAGACTGGGACTTCTCACGTCAATGGAGCACATGATACTTCAAAGCTTGCTGGCCTTCTTGAGAACTTCATCAAGAAGTATGTCCAGTGTTATGGTTGTGGAAATCCTGAAACTGAGATCATAATTACGAAGAACCAGATGATCCAGCTGAAATGTGCTGCTTGTGGTTTTGTGTCCGATGTTGATATGAGAGACAAACTGACTACCTTCATCGTTAAGAATCCTCCAGAAGTAAAGAAAGGATCCAAAGACAAGAAGGCCATGCGGAGAGCTGAGAAGGAGAGACTCAAGGAAGGTGAAGCAGCTGATGAGGAGCTGAAGAAAGTGAAGAAAGAGGTTAAGAAGAAAGCTTCTTCATCTTCAAAGGATGGCACTGCAAAATCCAGCATTTCGAAGAAGAAAGGAAGTGGTTCTGATGAAGACCGCATATCACCTACTCAAAGAAAAATTGACGAGAAAGTGGAGGCTCCTGATGAAGAAGATGATGATGATGATGGTGTGCAGTGGCAGACAGATACGTCACTGGATGCTGCTCGTCAAAGAATCCAAGAACAGTTAAGTACTGTGACAGCTGATATGGTTATGCTTTCTACAGATGAACCAGAGAAGAAAAAAAAAACAGCAGGAAATGAAAATGGTGGTTCTCAGAATGGTAACTCAATACACTACGGGACTATCGTTGATGAAGTGAAAGCAAATTTGAAGAAAGGTTTTGGGGCAAGTGAATTGCTTTCTCATCTTGCAGCACTTCCTGCACCTGCTCAGGATAAGATGAATGCTCTGGTGGAAGCTATATTTGAGGGCATAGAGAAAGGTTTTGCTAAAGAAACTCTTAAGAAGAAGCACTACTTTGCTGCTGCTGTTGCTGAGGGATCCCAAATTTTCTTGCTTCATGCTATTGAGGAATTCTCTTGCAAGTCTAATTCCAATGCTTTGAAGGAGGTTGCCCTGGTTCTGAAGGCACTGTACGATGCTGATGTGTTGGAGGAAGAGCACATAGTTCTGTGGTATGGAAAGGGACTGAAAGGAGATAACAAGAACTCCAAGATTTGGAAGAATGTTCAACCTTTCATTGACTGGCTTCAGAACGCAGAATCAGAATCGGATGAAGAATAA 1329 0.4259 MALQNIGAANSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTSKLAGLLENFIKKYVQCYGCGNPETEIIITKNQMIQLKCAACGFVSDVDMRDKLTTFIVKNPPEVKKGSKDKKAMRRAEKERLKEGEAADEELKKVKKEVKKKASSSSKDGTAKSSISKKKGSGSDEDRISPTQRKIDEKVEAPDEEDDDDDGVQWQTDTSLDAARQRIQEQLSTVTADMVMLSTDEPEKKKKTAGNENGGSQNGNSIHYGTIVDEVKANLKKGFGASELLSHLAALPAPAQDKMNALVEAIFEGIEKGFAKETLKKKHYFAAAVAEGSQIFLLHAIEEFSCKSNSNALKEVALVLKALYDADVLEEEHIVLWYGKGLKGDNKNSKIWKNVQPFIDWLQNAESESDEE 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01662 442 MobiDBLite consensus disorder prediction 270 291 - -
Spst1g01662 442 SUPERFAMILY ARM repeat 294 436 IPR016024 -
Spst1g01662 442 SMART 542_3 352 438 IPR003307 GO:0005515
Spst1g01662 442 Gene3D - 2 104 - -
Spst1g01662 442 Gene3D - 105 145 - -
Spst1g01662 442 MobiDBLite consensus disorder prediction 147 240 - -
Spst1g01662 442 Gene3D - 292 442 - -
Spst1g01662 442 Pfam eIF4-gamma/eIF5/eIF2-epsilon 364 442 IPR003307 GO:0005515
Spst1g01662 442 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 11 101 IPR016189 GO:0003743|GO:0006413
Spst1g01662 442 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 441 IPR045196 GO:0003743|GO:0006413
Spst1g01662 442 MobiDBLite consensus disorder prediction 148 226 - -
Spst1g01662 442 FunFam Eukaryotic translation initiation factor 5 105 145 - -
Spst1g01662 442 FunFam Eukaryotic translation initiation factor 5 290 433 - -
Spst1g01662 442 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Spst1g01662 442 ProSiteProfiles W2 domain profile. 284 442 IPR003307 GO:0005515
Spst1g01662 442 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Spst1g01662 442 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Spst1g01662 442 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Spst1g01662 442 CDD W2_eIF5 298 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01662 Spst-Chr1 20489563 20490891 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01662 1 435 Eukaryotic Initiation Factors Gene Family AT1G77840 64.732 1.51e-178 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01662 K03262 - gmx:100777906 706.057