Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01660 ATGGCCTTGCAGAATATTGGTGCCGGTAACAGTGATGATGCCTTCTATAGGTACAAGATGCCTAGAATGATCACCAAAATTGAGGGCAGAGGTAATGGCATCAAAACAAATATTGTCAATATGGTTGATATTGCAAAAGCCTTGGCTAGGCCAGCTTCCTATACAACAAAGTACTTTGGTTGTGAGCTTGGAGCCCAATCAAAATTTGATGAGAAAACTGGGACTTCCCATGTTAATGGCGCGCATGAAACTGCAAAACTTGCTGGCCTTCTTGAGATCTTCATCAAAAAATATGTCCAGTGTTATGGTTGTGGAAATCCTGAAACTGAGATCTTAATTACTAAGAACCAAATGATCCAGCTGAAATGTGCTGCTTGTGGTTTTGTGTCTGATGTTGATATGAGAGACAAGCTGACTACCTTCATCGTTAAGAATCCTCCAGAAGTAAAGAAAGGATCCAAAGACAAGAAGGCCATGAGGAGAGCTGAGAAAGAGAGACTGAAGGAAGGTGAAATGGCTGATGAGGAACAGAAAAAACTGAAGAAAGAGGTTATTAAGAAGAAAGGAACTTCATCTTCCAAGGATGTTGCGCCAAAATCTACTTCTTCAAAGAAAAAGGCAAATGGCTCTGACGAAGAGCGCCCATCTCCTCCTCACAGTCAAATTGATGAGAAGGACGAGGTTTTTGACAAGGAAGATGAGGATGATGACATACAATGGCAAACAGATACATCACTGGAGGCTGCTCGTCAACGAATCCAGGAACAGTTGAGTGCCGTGACAGCTGACATGGTCATGCTTTCCACAGATGAGCCAGAGAAGAAGGCCACAACCAAGGTAAGTAACAATTCTGAGAATGGTAACTCTTTAACCTACAGGACACTGGTTGCAGAAGTCAAAGCAAATTTGAATAAAGGTGTCAAGGCAAAAGAGTTGGTGTCCCATCTAGCCGCACTTTCTGCATCAGCTCAGGAAAAGATGAGTGCCCTGTATGAAGCCCTTTTTGGGGGCATTGAGAAAGGGTTTGCAAAAGAAGCAATTAAGAAGAAGAACTACCTTGCTGCTGCAGTTGCGGAGGAAGAGGGTTTCCAGTTGTTACTCTTGTGTGCAATTGAGGAATTTTCTTGCAAGTCTACATCCAATGCGTTGAAGGAAGTTGCCTTGGTTCTGAAGGCACTCTACGATGCTGATGTGTTAGAGGAAGAGCACATAGTCCAGTGGTATCAAAATGGACTGAAAGGTGATAACAAGAACTCTCAGATTTGGAAGAATGCTCAACCGTTCATTGAATGGCTACAGAATGCAGAATCAGAATCGGATGAAGAATAA 1329 0.4274 MALQNIGAGNSDDAFYRYKMPRMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHETAKLAGLLEIFIKKYVQCYGCGNPETEILITKNQMIQLKCAACGFVSDVDMRDKLTTFIVKNPPEVKKGSKDKKAMRRAEKERLKEGEMADEEQKKLKKEVIKKKGTSSSKDVAPKSTSSKKKANGSDEERPSPPHSQIDEKDEVFDKEDEDDDIQWQTDTSLEAARQRIQEQLSAVTADMVMLSTDEPEKKATTKVSNNSENGNSLTYRTLVAEVKANLNKGVKAKELVSHLAALSASAQEKMSALYEALFGGIEKGFAKEAIKKKNYLAAAVAEEEGFQLLLLCAIEEFSCKSTSNALKEVALVLKALYDADVLEEEHIVQWYQNGLKGDNKNSQIWKNAQPFIEWLQNAESESDEE 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01660 442 CDD W2_eIF5 295 440 - -
Spst1g01660 442 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Spst1g01660 442 FunFam Eukaryotic translation initiation factor 5 288 433 - -
Spst1g01660 442 SMART 542_3 350 438 IPR003307 GO:0005515
Spst1g01660 442 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Spst1g01660 442 FunFam Eukaryotic translation initiation factor 5 105 145 - -
Spst1g01660 442 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Spst1g01660 442 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 441 IPR045196 GO:0003743|GO:0006413
Spst1g01660 442 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Spst1g01660 442 SUPERFAMILY ARM repeat 292 436 IPR016024 -
Spst1g01660 442 MobiDBLite consensus disorder prediction 148 226 - -
Spst1g01660 442 Gene3D - 3 104 - -
Spst1g01660 442 Gene3D - 283 442 - -
Spst1g01660 442 Gene3D - 105 145 - -
Spst1g01660 442 Pfam eIF4-gamma/eIF5/eIF2-epsilon 364 442 IPR003307 GO:0005515
Spst1g01660 442 MobiDBLite consensus disorder prediction 147 237 - -
Spst1g01660 442 ProSiteProfiles W2 domain profile. 282 442 IPR003307 GO:0005515
Spst1g01660 442 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01660 Spst-Chr1 20482406 20483734 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01660 1 435 Eukaryotic Initiation Factors Gene Family AT1G36730 63.311 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01660 K03262 - gmx:100777906 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01660 1 20482406 20483734 Spst1g01660 1 20482406 20483734 ECH